Locus 1536

Sequence ID 2L_DroMel_CAF1
Location 4,152,304 – 4,152,401
Length 97
Max. P 0.922799
window2485

overview

Window 5

Location 4,152,304 – 4,152,401
Length 97
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 85.85
Mean single sequence MFE -31.67
Consensus MFE -24.53
Energy contribution -25.62
Covariance contribution 1.09
Combinations/Pair 1.11
Mean z-score -3.52
Structure conservation index 0.77
SVM decision value 1.15
SVM RNA-class probability 0.922799
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4152304 97 - 22407834
AAA-------------------UGCGGCAGCGGUUGAAAUCAAUUCAAUGUCGCAGAGUGUGGAGUGCAUAAUGAAUGGAAACAAUCAGAGUAGAAGUGGUAAACCCACUCGACAC-
...-------------------(((((((..(((((....)))))...)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).))))- ( -31.70)
>DroSec_CAF1 281014 97 - 1
AAA-------------------UGCGGCAGCGGUUGAAAUCAAUUCAAUGUCGCAGAGUGUGGAGUGCAUAAUGGAUGGAAACAAUCAGAGUAGAAGUGGUAAACCCACUCGACAC-
...-------------------(((((((..(((((....)))))...)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).))))- ( -30.80)
>DroSim_CAF1 284907 97 - 1
AAA-------------------UGCGGCAGCGGUUGAAAUCAAUUCAAUGUCGCAGAGUGUGGAGUGCAUAAUGGAUGGAAACAAUCAGAGUAGAAGUGGUAAACCCACUCGACAC-
...-------------------(((((((..(((((....)))))...)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).))))- ( -30.80)
>DroEre_CAF1 296910 97 - 1
AAA-------------------UGCGGCAGUGGUUGAAAUCAAUUCAGUGUCGCAGAGUGUGGAGUGCAUAAUGGAUGGAAACAAUCAGAGAAGAAGUGGUAAGCCCACUCGACAC-
...-------------------(((((((.((((((....))).))).)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).))))- ( -33.40)
>DroYak_CAF1 304036 97 - 1
AAA-------------------UGCGGCAGCGGUUGAAAUCAAUUCAAUGUCGCAGAGUGUGGAGUGCAUAAUGGAUGGAAACAAUCAGAGAAGAAGUGGUAAGCCCACUCGACAC-
...-------------------(((((((..(((((....)))))...)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).))))- ( -31.10)
>DroAna_CAF1 330696 115 - 1
AAAAUGCGGUGCGUUGGGUAUGUGUGGCAGCGGUUGAAAUCAAUUCAAGGUU--UGAUUGUGGAAACCAUAAUGGAUGGAAACAAUCAGAGAAAAAAUGGUUGCCACCCUUGACACA
.........((.((..((...(.((((((((.((((((.....)))....((--(((((((.....((((.....))))..))))))))).....))).)))))))))))..)).)) ( -32.20)
>consensus
AAA___________________UGCGGCAGCGGUUGAAAUCAAUUCAAUGUCGCAGAGUGUGGAGUGCAUAAUGGAUGGAAACAAUCAGAGAAGAAGUGGUAAACCCACUCGACAC_
......................(((((((..(((((....)))))...)))))))..((((.(((((.....(((.((....)).)))..........((....))))))).)))). (-24.53 = -25.62 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:58 2006