Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,140,828 – 4,140,928 |
Length | 100 |
Max. P | 0.745946 |
Location | 4,140,828 – 4,140,928 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -30.21 |
Consensus MFE | -17.33 |
Energy contribution | -18.33 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.22 |
Mean z-score | -2.10 |
Structure conservation index | 0.57 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4140828 100 - 22407834 AUCACCGCUCCCGCUCUUUG-GCCACUCGCUU---UCGAUGGAAAGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA ......((....))...(((-((..((.((((---((....))))))))(((((((....)))))))..........)))))((((((((.....)))))))). ( -28.20) >DroSim_CAF1 273914 99 - 1 AUCCCCGC-CCGGCUCUUUG-GCCACUCCAUU---UCGAUGGAGGGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA ......((-((((((....)-)))..(((((.---...)))))))))..(((((((....)))))))..(((......))).((((((((.....)))))))). ( -35.70) >DroEre_CAF1 284249 96 - 1 UUCCCCGC-CC---CCUUUG-GCCACUCGGUU---ACGAUGGAGGGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA ((((..((-((---((..((-(((....))))---)....)).))))..(((((((....)))))))...))))........((((((((.....)))))))). ( -32.20) >DroWil_CAF1 385466 86 - 1 UUC--------GUCUCCAUC-GCCACCCA--------CAUGGCGAAC-GGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCAACAUUUCAUGAGGUGUGAAAUGA ...--------...(((.((-((((....--------..))))))..-.(((((((....)))))))...))).........((((((((.....)))))))). ( -26.20) >DroYak_CAF1 288873 96 - 1 UUCCGCGC-CG---CCUUUG-GCCACUCGGUU---UCAAUGGAGGGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA (((((.((-(.---((.(((-(((....))).---.))).))..)))..(((((((....)))))))..)))))........((((((((.....)))))))). ( -30.90) >DroAna_CAF1 318081 103 - 1 UGUUCCAG-CCGCCUCUUUUUUUUUUUUUGUUGGCCCGAUUGAAAGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA .....((.-(((((((............(((((((.((((((((.........))))))))((((((....)))))))))))))......)))))).)...)). ( -28.07) >consensus UUCCCCGC_CCG_CUCUUUG_GCCACUCGGUU___UCGAUGGAGAGCAGGAAGUUCAAUCGAAUUUCAACGGAAAUUGCCGACAUUUCAUGAGGUGUGAAAUGA .....................(((.(((.(((.....))).))))))..(((((((....)))))))..(((......))).((((((((.....)))))))). (-17.33 = -18.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:57 2006