Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,139,641 – 4,139,737 |
Length | 96 |
Max. P | 0.535320 |
Location | 4,139,641 – 4,139,737 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 92.46 |
Mean single sequence MFE | -24.54 |
Consensus MFE | -18.90 |
Energy contribution | -19.30 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.55 |
Structure conservation index | 0.77 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4139641 96 - 22407834 GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUGCGUCGA (((.((((.....)))).((.(((((((((.(......).)))))))))..))..(((((.(....))))))))).....((((.......)))). ( -26.50) >DroSec_CAF1 269080 96 - 1 GCCAUUGAAUGAAUCGAACAGCAUCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUUGA (((.((((.....))))......(((((((..(((........)))..)))))))(((((.(....))))))))).((((((......)))))).. ( -24.30) >DroSim_CAF1 272720 96 - 1 GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUUGA (((.((((.....)))).((.(((((((((.(......).)))))))))..))..(((((.(....))))))))).((((((......)))))).. ( -26.30) >DroEre_CAF1 283107 91 - 1 GCCAUUGAAUGAAUCGAACAGGAGCCAUUUGGUCGAAUG-----GUUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACAUCUA (((.((((.....)))).((.(((((((((....)))))-----))))...))..(((((.(....)))))))))..(((((......)))))... ( -22.80) >DroYak_CAF1 287697 91 - 1 GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUG-----GUUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUGCGUCUA ((((((.......((((((..(.(((....))).)....-----))))))......))))))....(((.(..(((....)).)..).)))..... ( -22.82) >consensus GCCAUUGAAUGAAUCGAACAGCAGCCAUUUGGUCGAAUCGAAAUGGUUGAAUGGAAAGUGGCGAAAGCACUUGGCAAAUGUGACUGAAUACGUCGA (((.((((.....)))).......(((((..((((........))))..))))).(((((.(....)))))))))..(((((......)))))... (-18.90 = -19.30 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:56 2006