Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,138,406 – 4,138,518 |
Length | 112 |
Max. P | 0.605279 |
Location | 4,138,406 – 4,138,518 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -18.64 |
Consensus MFE | -13.10 |
Energy contribution | -13.52 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.14 |
Mean z-score | -1.22 |
Structure conservation index | 0.70 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4138406 112 + 22407834 UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCC------CUCAGUUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCCUUCUGCAAUUUAAUUGC ...((.(((((((((......))))(((....))).............-.....------.))))).)).............((((((.....((((........))))....)))))) ( -18.40) >DroSec_CAF1 267848 112 + 1 UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCG------CUCAGCUGCUCCCUUCUCGUGCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC (((((.....(((((......))))))))))((((.............-....(------(......)).......(((..((........))..))).......)))).......... ( -20.20) >DroEre_CAF1 281837 112 + 1 UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC-ACCCU------CUCAGCUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC .((((...(((((((......))))).))...))))............-.....------......(((........((.(((((........)))))..))....))).......... ( -17.10) >DroWil_CAF1 380049 110 + 1 UAUGCCAUUGAUUGCAUAAUUGCAAUGCAUAUGCAUUGGACACGGUGG-UCUUU------UUCAUCCUCUCCAUCUUCC--CUCAGUUUCCUUAUCAACUACGCUUGCAAUUUAAUUGU (((((........)))))(((((((.((........((((...(((((-.....------.)))))...))))......--...((((........))))..)))))))))........ ( -20.70) >DroYak_CAF1 286441 112 + 1 UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUUCCUCACUUC-AUCCC------CUCAGCUGCUCCUUCCUCGUUCGUAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC .((((...(((((((......))))).))...))))............-.....------......(((.......((((.((........)).))))........))).......... ( -15.66) >DroAna_CAF1 315306 116 + 1 UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUAUACCCGCCAUCCGCCUCGCCAACUUCAGUCU--CUUCUCUCUUCUUCAAUUC-CCGGGCGACUCGUCCUGCAAUUUAAUUGC (((((...(((((((......))))).))...))))).....((....((..(((((...........--...................-...)))))..))....))........... ( -19.81) >consensus UAUGCCAUUGAUUGCUUAAUUGCAAUGCAUAUGCAUUUCCCUCACUUC_ACCCC______CUCAGCUGCUCCUUUCUCGUUCGCAAUUCCCCGUGCGACUCGUCCUGCAAUUUAAUUGC .((((...(((((((......))))).))...))))..............................................((((((.....((((........))))....)))))) (-13.10 = -13.52 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:49 2006