Locus 153

Sequence ID 2L_DroMel_CAF1
Location 438,091 – 438,181
Length 90
Max. P 0.838029
window239

overview

Window 9

Location 438,091 – 438,181
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 87.95
Mean single sequence MFE -22.06
Consensus MFE -17.94
Energy contribution -20.26
Covariance contribution 2.32
Combinations/Pair 1.08
Mean z-score -1.75
Structure conservation index 0.81
SVM decision value 0.74
SVM RNA-class probability 0.838029
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 438091 90 + 22407834
CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGAAUGCGACAAUUUCUAUUUGCAAGAAUUGUAAAAAAAAAUCU
....((((((((((......))))..))))))(((((((..(((((...)))))...)))))))((((((.....))))))......... ( -21.70)
>DroSec_CAF1 15451 89 + 1
CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAAAAUUCUAAAA-AAAAUCU
.....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((((((.....)))))).-....... ( -24.30)
>DroSim_CAF1 14605 88 + 1
CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAGAAUUCUGAA--AAAAUCU
.....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((..((.....))..))--....... ( -23.80)
>DroEre_CAF1 15635 85 + 1
CUUUAUCGCAUCUGAUGAGCCAAAAAUGCGGUUAGAAAUGACGCGAUGGAUGCGACAAUUUCUCUUUGGA---AUUCUAAAAUGCUUU--
.....(((((((((.((.((.......)).((((....)))).)).))))))))).((((((.....)))---)))............-- ( -18.20)
>DroYak_CAF1 15151 87 + 1
CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGCUGGAUGCGACAAUUUCUCUUUGGA---AUUCUACAAAGUGUCCG
.....((((((((........(....)(((((((....)))).))).))))))))......(.(((((..---......))))).).... ( -22.30)
>consensus
CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAA_AAUUCUAAAA_AAAAUCU
.....((((((((((((.((.......)).((((....)))).)))))))))))).........((((((.....))))))......... (-17.94 = -20.26 +   2.32) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:34 2006