Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 438,091 – 438,181 |
Length | 90 |
Max. P | 0.838029 |
Location | 438,091 – 438,181 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 87.95 |
Mean single sequence MFE | -22.06 |
Consensus MFE | -17.94 |
Energy contribution | -20.26 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.81 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 438091 90 + 22407834 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGAAUGCGACAAUUUCUAUUUGCAAGAAUUGUAAAAAAAAAUCU ....((((((((((......))))..))))))(((((((..(((((...)))))...)))))))((((((.....))))))......... ( -21.70) >DroSec_CAF1 15451 89 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAAAAUUCUAAAA-AAAAUCU .....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((((((.....)))))).-....... ( -24.30) >DroSim_CAF1 14605 88 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAAGAAUUCUGAA--AAAAUCU .....(((((((..(((.((.(....))).((((....)))).)))..))))))).........((..((.....))..))--....... ( -23.80) >DroEre_CAF1 15635 85 + 1 CUUUAUCGCAUCUGAUGAGCCAAAAAUGCGGUUAGAAAUGACGCGAUGGAUGCGACAAUUUCUCUUUGGA---AUUCUAAAAUGCUUU-- .....(((((((((.((.((.......)).((((....)))).)).))))))))).((((((.....)))---)))............-- ( -18.20) >DroYak_CAF1 15151 87 + 1 CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGCUGGAUGCGACAAUUUCUCUUUGGA---AUUCUACAAAGUGUCCG .....((((((((........(....)(((((((....)))).))).))))))))......(.(((((..---......))))).).... ( -22.30) >consensus CUUUAUCGCAUCUGAUGAGCCAGAAAUGCGGUUAGAAAUGACGCGUUGGAUGCGACAAUUUCUCUUUGGAA_AAUUCUAAAA_AAAAUCU .....((((((((((((.((.......)).((((....)))).)))))))))))).........((((((.....))))))......... (-17.94 = -20.26 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:34 2006