Locus 1528

Sequence ID 2L_DroMel_CAF1
Location 4,135,775 – 4,135,865
Length 90
Max. P 0.919573
window2472

overview

Window 2

Location 4,135,775 – 4,135,865
Length 90
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 86.54
Mean single sequence MFE -14.00
Consensus MFE -10.32
Energy contribution -10.52
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.74
SVM decision value 1.13
SVM RNA-class probability 0.919573
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4135775 90 + 22407834
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAACGAUAACAAAAAAAAAACAAGCACAAACAAGUGUAAUCAAUGCAUUCACA----------
.....(((((((((((.....)))))((((..((......))..................((((......)))).)))).))))))....---------- ( -11.10)
>DroSec_CAF1 264966 95 + 1
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAA-----AAAAAAAGGAAACAAGCACAAACAAGUGUAAUCAAUGCAUUUACAAAUGCCACGU
......((((((((((.....))))))).....((((...-----.......(....)..((((......))))))))...(((((....)))))))).. ( -17.20)
>DroSim_CAF1 268609 91 + 1
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAA-----AA----AGAAAACAAGCACAAACAAGUGUAAUCAAUGCAUUUACAAAUGCCACGU
......((((((((((.....)))))))............-----..----.........((((......)))).......(((((....)))))))).. ( -13.30)
>DroEre_CAF1 278913 86 + 1
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAA-----A--------AAACAAGCACAAACAAGUGUAAUCAAUGCAUUUACA-AUGCUUCGU
......((.(((((((.....)))))))...)).......-----.--------..(((((((.....(((((((.....)))))))...-.))))).)) ( -14.20)
>DroYak_CAF1 283507 86 + 1
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAA-----A--------AAACAAGCACAAACAAGUGUAAUCAAUGCAUUUACA-AUGCUUCGU
......((.(((((((.....)))))))...)).......-----.--------..(((((((.....(((((((.....)))))))...-.))))).)) ( -14.20)
>consensus
AUAAAAGUGUAUUAUGGACCACAUAAUGAUAACGAUUAAA_____A_____A__AAACAAGCACAAACAAGUGUAAUCAAUGCAUUUACA_AUGCCACGU
....((((((((((((.....)))))).................................((((......)))).......))))))............. (-10.32 = -10.52 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:45 2006