| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,134,825 – 4,134,926 |
| Length | 101 |
| Max. P | 0.853647 |
| Location | 4,134,825 – 4,134,926 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -23.17 |
| Consensus MFE | -14.46 |
| Energy contribution | -14.74 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853647 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4134825 101 + 22407834 -CAUAC-UACGAAUAUGCGUAGGCAGUUAAUGCCAAGCG--GCAG-CAAUAU-AUAUUAUCU----GUCUUAAAAUAGAAAAUGAACAUAAGGCGCA---CAUUUGGCAUAUUU -....(-((((......))))).......((((((((.(--((.(-(..(((-.((((.(((----((......))))).))))...)))..)))).---).)))))))).... ( -23.80) >DroVir_CAF1 397149 106 + 1 ----AAAAACAAAUAUGCGUAGGCAGUUAAUGCCAGCUCU-AAAG-UAAUAUGAUAUUAUC--UCCGACUUAAAAUAGAAAAUGAGCAUAAGGCACACAGCAUUUGGCAUAUUU ----......((((((((...((((.....)))).(((..-...(-(..((((.((((.((--(............))).))))..))))..))....))).....)))))))) ( -19.70) >DroGri_CAF1 369353 108 + 1 ----ACAACCAAAUAUACGUUGGCAGUUAAUGCCAGCUCUUUGUA-CAAUAUGAUAUUAUCUCAG-GACUUGGAAUAGAAAAUGAGCAUAAGCCGCCAAGCAUUUGGCAUAUUU ----......((((((..(((((((.....)))))))........-..........((((((((.-..((......))....)))).))))...(((((....))))))))))) ( -21.80) >DroSec_CAF1 264019 98 + 1 ----AC-UACGAAUAUGCGUAGGCAGUUAAUGCCAACCG--GCAG-CAAUAU-AUAUUAACU----GUCUUAAAAUAGAAAAUAAACAUAAGGCGCA---CAUUUGGCAUAUUU ----..-..(((((.(((((((((((((((((((....)--))).-......-...))))))----))))................(....))))))---.)))))........ ( -23.10) >DroEre_CAF1 277949 102 + 1 UCGUAC-UAUGAAUAUGCGCAGGCAGUUAAUGCCAACCG--GCAG-CCAUAU-AUAUUAUCU----GUCUUAAAAUAGAAAAUGAACAUAAGGCGCA---CAUUUGGCAUAUUU ......-...((((((((.((((((.....)))).....--((.(-((.(((-.((((.(((----((......))))).))))...))).))))).---....)))))))))) ( -25.20) >DroAna_CAF1 311019 97 + 1 -------UAUAAAUUUGCGUUGGCAGUUAAUGCCAACAG--CCAGGCGAUAU-AUAUUAUCU----GUCUUAAAAUAGAAAAUGAACAUAAGGCGCA---CAUUUGGCAUAUUU -------..(((((.((((((((((.....))))))).(--((((((((((.-....)))).----)))).......(........)....))))))---.)))))........ ( -25.40) >consensus ____AC_UACAAAUAUGCGUAGGCAGUUAAUGCCAACCG__GCAG_CAAUAU_AUAUUAUCU____GUCUUAAAAUAGAAAAUGAACAUAAGGCGCA___CAUUUGGCAUAUUU ..........((((((((...((((.....))))................................((((((................))))))............)))))))) (-14.46 = -14.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:44 2006