Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,134,305 – 4,134,405 |
Length | 100 |
Max. P | 0.997007 |
Location | 4,134,305 – 4,134,405 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -16.03 |
Energy contribution | -17.55 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.25 |
Mean z-score | -3.25 |
Structure conservation index | 0.50 |
SVM decision value | 2.78 |
SVM RNA-class probability | 0.997007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4134305 100 + 22407834 ACAUCACUCCUUUCAUAUUUAUCAUUACCGUCUGCUGC--CGUCCUCUCAUCUAUUCAAUGUUUGUAGCCAUGGCAGGAGC--U---G-GUAGGGAGGAGCUGAUGUU (((((((((((..(...........(((((.((.((((--(((...((((..(((...)))..)).))..))))))).)).--)---)-))))..))))).)))))). ( -34.00) >DroSec_CAF1 263488 107 + 1 GCAUAACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGUCCUGUCCUCUCGUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAGGAU-GGAGGAAGGAGCUAAUGUU ((((..((((((((.((........))((((((((.((((((.((....(.((((.........)))))...)))))))).))).)))-)).))))))))...)))). ( -37.00) >DroSim_CAF1 267132 107 + 1 GCAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGUCCUGUCCUCUCGUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAGGAU-GGAGGAAGGAGCUGAUGUU ((((((((((((((.((........))((((((((.((((((.((....(.((((.........)))))...)))))))).))).)))-)).)))))))).)))))). ( -42.90) >DroEre_CAF1 277450 80 + 1 ACAUCACUCCUUCCCUAUUUAUCAUUACCGUCUGCUGC--CGUCCUCUCAUCUAUUCAAUGUUUGCAGUCAUGGC--------------------------UGAUGUU ......................(((((((((..(((((--........................))))).)))).--------------------------))))).. ( -10.46) >DroYak_CAF1 282008 106 + 1 ACAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCCAC--CGUCCUCUCAUCUAUUCAAUGUUUGCAGUGAUGGCAGGAUGGCAGAAUCAGAGGGAGGACCUGAUGUU ((((((.(((((((.((........))...(((((((.--..((((.(((((.(((((.....)).)))))))).)))))))))))......)))))))..)))))). ( -34.40) >consensus ACAUCACUCCUUCCAUAUUUAUCAUUACCGUCUGCUGC__CGUCCUCUCAUCUAUUCAAUGUUUGUAGCCAUGGCAGGAUCGCAG_AU_GGAGGAAGGAGCUGAUGUU ((((((((((((((................(((((((...........(((.......)))..........)))))))..............)))))))).)))))). (-16.03 = -17.55 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:43 2006