Locus 1525

Sequence ID 2L_DroMel_CAF1
Location 4,131,727 – 4,131,823
Length 96
Max. P 0.694196
window2469

overview

Window 9

Location 4,131,727 – 4,131,823
Length 96
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 87.18
Mean single sequence MFE -29.87
Consensus MFE -25.14
Energy contribution -24.70
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.90
Structure conservation index 0.84
SVM decision value 0.34
SVM RNA-class probability 0.694196
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4131727 96 - 22407834
AGCGAAAGUGGGCG------------GUGGAAAGUGGCGCCAGUGGGGUAAGCUGGAAUAUACCAGCGACAGAGGCAGUAUCUAAAGUAGGAGGAGCCCCAGCACCAG
.((....))(((((------------(((........))))..((((((..(((((......)))))...(((.......)))............)))))))).)).. ( -32.40)
>DroSec_CAF1 260799 96 - 1
AGCGAAAGUGGGCG------------GGGGAAAGUGGCGUCAGUGGGGUAAGCUGGAAUAUACCGGCAACAGACGCAGUAUCUAAAGUAGGAGGAGCCCCAGCAGAAG
.((....))..((.------------((((......(((((.((.......(((((......))))).)).)))))....(((......)))....)))).))..... ( -28.30)
>DroSim_CAF1 264513 108 - 1
AGCGAAAGUGGGCGGUGGAAAGUGGGGGGGAAAGUGGCGCCAGUGGGGUAAGCUGGAAUAUACCGGCAACUGAGGCAGUAUCUAAAGUAGGAGGAGCCCCAGCAGAAG
.((....))..((((((..(..(........)..)..))))..((((((..(((((......))))).((((...))))................))))))))..... ( -28.90)
>consensus
AGCGAAAGUGGGCG____________GGGGAAAGUGGCGCCAGUGGGGUAAGCUGGAAUAUACCGGCAACAGAGGCAGUAUCUAAAGUAGGAGGAGCCCCAGCAGAAG
.((....)).((((.......................))))..((((((..(((((......))))).............(((......)))...))))))....... (-25.14 = -24.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:42 2006