Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,128,389 – 4,128,483 |
Length | 94 |
Max. P | 0.588308 |
Location | 4,128,389 – 4,128,483 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 88.16 |
Mean single sequence MFE | -15.62 |
Consensus MFE | -13.04 |
Energy contribution | -12.90 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.73 |
Structure conservation index | 0.83 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4128389 94 - 22407834 AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGGCCACCCACUUUUCUGCCC .............((((..(((...(((((....)))))....((((((((.......))))..))))))).)))).................. ( -17.00) >DroSec_CAF1 257346 94 - 1 AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGACCACCCACUUUUCUGCCC .......(((....(((((..(((((((((....)))))....((........))..))))...)))))....))).................. ( -14.60) >DroSim_CAF1 261019 94 - 1 AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGGCCACCCACUUUUCUGCCC .............((((..(((...(((((....)))))....((((((((.......))))..))))))).)))).................. ( -17.00) >DroEre_CAF1 268500 94 - 1 AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCGCCCACUUUUCUGCCC ....................((((((((((....)))))....(...((((((.......))))))...).))))).................. ( -14.40) >DroYak_CAF1 275943 94 - 1 AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCGCCCACUUUUCUGCCC ....................((((((((((....)))))....(...((((((.......))))))...).))))).................. ( -14.40) >DroAna_CAF1 302838 80 - 1 ------------CUCUGUGUGUGAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUGGAUCGCAUUUUCCAUACCAUUCUAGUGU-- ------------....(((((.((((((((....)))))....((((((((.......))))..)))).....))))))))...........-- ( -16.30) >consensus AUUCCUUUCAUCCCCGAUUUGCAAAGCUCAAAAAUGAGCAAAAGAUUUCAAUUUCAUUUUGAUUGAUCGCAUUUGCCCACCCACUUUUCUGCCC ...................(((...(((((....)))))....((((((((.......))))..)))))))....................... (-13.04 = -12.90 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:38 2006