Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,125,980 – 4,126,078 |
Length | 98 |
Max. P | 0.740237 |
Location | 4,125,980 – 4,126,078 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 87.88 |
Mean single sequence MFE | -24.80 |
Consensus MFE | -20.48 |
Energy contribution | -20.23 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.09 |
Structure conservation index | 0.83 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4125980 98 + 22407834 CUAUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCACCGCAUAUUUGACGGUACGGUGGAAAUCCUCACCCACUCAGACAAUUUU .....((((.......))))((((((((.......))))))))(((((((((((....)).))))..(((((......)))))......))))).... ( -22.60) >DroSec_CAF1 255004 98 + 1 CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGUACGGUGAAAAUCCCCACCCACUCAGACUUUUUU ..(((...........((((((((((((.......)))))))))))).(((((.......)))))..((((........))))......)))...... ( -23.40) >DroSim_CAF1 258617 98 + 1 CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGUACGGUGAAAGUCCCCACCCACUCAGACUUUUUU .....((((.......((((((((((((.......)))))))))))).(((((.......))))))))).(((((((............))))))).. ( -24.90) >DroEre_CAF1 265928 97 + 1 CUGUCCCAUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACGGUGGAAAUCCCCAACCACCAAC-UCUUUUG ................((((((((((((.......)))))))))))).(((((.......)))))..(((((..........)))))...-....... ( -26.90) >DroYak_CAF1 273427 98 + 1 CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACUGUGGAAAUCCCCACCCACUCACGUCUUUUU ......(((.......((((((((((((.......)))))))))))).(((((.......)))))...((((......))))......)))....... ( -24.30) >DroAna_CAF1 300277 92 + 1 CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGUGGCACGGUGGCAAGCUCCCUCCGCCCC------UUC .((((((((.......((((((((((((.......)))))))))))).(((((.......))))))))).))))...............------... ( -26.70) >consensus CUGUCCCGUUCUUAUCGCGGCAAUAAAUCGCAUUAAUUUAUUGUUGUCGCCGCAUAUUUGGCGGCACGGUGGAAAUCCCCACCCACUCAGACCUUUUU ...((((((.......((((((((((((.......)))))))))))).(((((.......))))))))).)).......................... (-20.48 = -20.23 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006