Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,124,472 – 4,124,565 |
Length | 93 |
Max. P | 0.707172 |
Location | 4,124,472 – 4,124,565 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.63 |
Mean single sequence MFE | -13.67 |
Consensus MFE | -10.03 |
Energy contribution | -9.98 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.20 |
Mean z-score | -1.61 |
Structure conservation index | 0.73 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4124472 93 - 22407834 CU-------ACUUCCCACCUGC----CUUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACAAAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU ..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70) >DroSec_CAF1 253510 93 - 1 CU-------ACUUUCCACCUGC----CCUUCGCGAAUUCAAUUUUCUUG----------------CCUUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU ..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70) >DroSim_CAF1 257138 93 - 1 CU-------ACUUUCCACCUGC----CCUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU ..-------.............----.....(((((..(((.....)))----------------.....))))).(((.....((((((((((...)))))))))).......)))... ( -12.70) >DroEre_CAF1 264450 93 - 1 CU-------ACUUCCCACCUGC----CUUUCGCGAAUUCAAUUUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCAUAUAGUUGUU ..-------.............----.....(((((..(((.....)))----------------.....)))))....(((((((((((((((...)))))))))).......))))). ( -13.71) >DroYak_CAF1 271936 93 - 1 CU-------ACUUCCCACCUGC----CUAUCGCGAAUUCAAUAUUCUUG----------------CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAUUUAUU ..-------.............----.....(((((..(((.....)))----------------.....))))).........((((((((((...))))))))))............. ( -12.60) >DroAna_CAF1 298454 118 - 1 AUUCUGGUGGCUUUGCACCUGUUUUUCUUUUGCGUAUUCAAUUUUCUAGAUGCUCAGCUCCUGCUUCCCUUAAAUAAACACAAUAAGACCUAAUUUGAUUGGGUUAUUCA--UAGUUACA ......((((((.((....(((((......((.((((..(......)..)))).))((....))...........)))))......((((((((...))))))))...))--.)))))). ( -17.60) >consensus CU_______ACUUCCCACCUGC____CUUUCGCGAAUUCAAUUUUCUUG________________CCCUUUUCGCAAACACAAUAUAACCUAAUUUGAUUGGGUUAUUCACAUAGUUAUU ...............................(((((..................................))))).........((((((((((...))))))))))............. (-10.03 = -9.98 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:36 2006