Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 437,523 – 437,637 |
Length | 114 |
Max. P | 0.979987 |
Location | 437,523 – 437,637 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.02 |
Mean single sequence MFE | -31.03 |
Consensus MFE | -27.87 |
Energy contribution | -27.90 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.03 |
Mean z-score | -1.94 |
Structure conservation index | 0.90 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.979987 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 437523 114 - 22407834 ------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAACGUUCAAUAAAUUU ------((((((...((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))).))))))....... ( -31.50) >DroSec_CAF1 14888 114 - 1 ------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAAUGUUCAAUAAAUUU ------(((((((..((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))))))))))....... ( -32.70) >DroSim_CAF1 14042 114 - 1 ------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUGAACGUUCAAUAAAUUU ------((((((...((((((....)))).......(((((..((.....))..)))))))......(((((((((((((((.....)))).))))))...))))).))))))....... ( -31.50) >DroEre_CAF1 15067 114 - 1 ------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAGCCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUUAAUAAAUUU ------(((((....((((((....)))).......(((((..((.....))..)))))))...........((((((((((.....)))).))))))...))))).............. ( -28.10) >DroYak_CAF1 14559 114 - 1 ------UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCGACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUCAAUAAAUUU ------((((((...(((((((....(((((........))).))...)))))(....)))...........((((((((((.....)))).)))))).........))))))....... ( -29.50) >DroAna_CAF1 18341 120 - 1 UUAUUUUUGUAUAAAGCGCCGGCAGCGGCGACUAUGGUUUCUACCAACUUGGUGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUCCAAUAAAUUU .....(((((.......((((....))))((((((((((((((((.....))))))))).))))........((((((((((.....)))).)))))).........)))..)))))... ( -32.90) >consensus ______UUGAAUAGAGCGCCGGCAGCGGCGACAACAGUUUCUACCAACCCGGCGGAGACGCAUAAAUUUCAAUAUUGGCGCAUUUUCUGUGUCUAAUAAAUUUCAACGUUCAAUAAAUUU ......((((((...((((((....)))).......(((((..((.....))..)))))))...........((((((((((.....)))).)))))).........))))))....... (-27.87 = -27.90 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:33 2006