Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,120,866 – 4,120,981 |
Length | 115 |
Max. P | 0.965656 |
Location | 4,120,866 – 4,120,981 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.85 |
Mean single sequence MFE | -39.76 |
Consensus MFE | -16.22 |
Energy contribution | -18.66 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.30 |
Mean z-score | -2.14 |
Structure conservation index | 0.41 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965656 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4120866 115 - 22407834 CGUCGCUCUGGAAUGUGUGAUCCUGUUGCAGG--CACUUUUCUUUGAGAAAAUCUGCCGCAGCACUUAUUCGCUUCCAUGGUUGGGGUAUGGCU---UUGCUGGCCCUCCAACCGCACAU .((.((..(((((.(((......((((((.((--((.(((((.....)))))..))))))))))......)))))))).((((((((...((((---.....)))))))))))))))).. ( -45.00) >DroSec_CAF1 249932 115 - 1 CGUCGCUCUGGAAUGUGUGAUCCUGUUGGAGG--CACUUAUCCUUGCGAAAAUCUGCCGCAGCACUUAUCCGCUUCCAUGGUUGGGGUAUGGCU---UUGCUGGCCCUCCAACCGCACAU .((.((..(((((.(((.(((..(((((..((--((.((.((.....)).))..)))).)))))...))))))))))).((((((((...((((---.....)))))))))))))))).. ( -39.90) >DroEre_CAF1 260388 115 - 1 UAUCGCUCUGGAAAGUGUGAUCCUGCUGCAGA--CACUUAUCUUUGCGAAAGUCUGCCGCAGCACUGAUCCGCUUCCAUGGCUGUGGUAUGGCU---UUGCUGGCCUCCCAACCACACUG ....(((.(((((.(((.((((((((.(((((--(................)))))).))))....)))))))))))).)))((((((..((((---.....)))).....))))))... ( -44.19) >DroYak_CAF1 267951 115 - 1 CAUCGCUCUGGAAGGUGUGAUCCUUGUGCAGA--CACUUGUCUUUGCGAAAGUCUGCUGCAGCACUAAUUCGCUUCCAUGGCUGUGGUAUGGCU---UUACUGGCAAUCCAGCCGCACUG ....((..(((((((.(((....(((((((((--(..((((....))))..)))))).))))))).....).)))))).(((((.(((...(((---.....))).)))))))))).... ( -36.50) >DroAna_CAF1 293360 111 - 1 -----CUCAAGAUUGACGAAUU-UUUUGGAAGAGGACUUG---GAAGGGAAGUAUUCCUUAUUGCUGACCCUCUUCCAAGGGUAGGAGGAGGCAACCUCAGACGUUGUCCAACCACACAA -----.........(((((...-((((((((((((..(..---(.(((((.....)))))....)..).))))))))))))((..((((......))))..)).)))))........... ( -33.20) >consensus CAUCGCUCUGGAAUGUGUGAUCCUGUUGCAGG__CACUUAUCUUUGCGAAAGUCUGCCGCAGCACUGAUCCGCUUCCAUGGCUGGGGUAUGGCU___UUGCUGGCCCUCCAACCGCACAG ........(((((.(((.....((((.(((((....(..........)....))))).))))........)))))))).((((((((...((((........))))))))))))...... (-16.22 = -18.66 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:35 2006