Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,116,087 – 4,116,177 |
Length | 90 |
Max. P | 0.743345 |
Location | 4,116,087 – 4,116,177 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -16.02 |
Energy contribution | -15.67 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.21 |
Mean z-score | -1.86 |
Structure conservation index | 0.58 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4116087 90 + 22407834 AGGCGGUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCUGCACUCCGGCAC-------- .((.((((((..((.((((((..((((((..(...(((............-..)))...)..))))----))))))))))..)))))))).....-------- ( -27.24) >DroPse_CAF1 380121 98 + 1 AGUCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAGCCAUGCAAUUUGACUU----AAGUGGCAAUGCAGG-CGACGUCGCUCGGCUCU .((((((((((....((((((..((((((((..((((............))))..))))))))...----..))))))))))).)-))))(((....)))... ( -32.80) >DroGri_CAF1 348285 86 + 1 --UGGUUGCAUAAUGUGCCAGUUCUCAUUUGAUUGGCACCAAAUUUAUUG-CAUGCAAUUUGACUCGGCAAAGUGGCAGCUCCGG----CAAC---------- --..(((((.....(((((((((.......)))))))))..........(-(.(((..((((......))))...)))))....)----))))---------- ( -24.40) >DroYak_CAF1 259722 95 + 1 AGGCGUUUCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCUGCACUUCUGCACUCCG---G ..(((((....)))))(((((..((((((..(...(((............-..)))...)..))))----)))))))(((((.........)))))...---. ( -23.54) >DroAna_CAF1 289091 88 + 1 GGGCAUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG-CAUGCAAUUUGACUU----AAGUGGCAGUGCCGU----CGAC---GCA---G .((((((((.....((((((.(((......)))))))))...(((((...-((.......))...)----)))).))))))))..----....---...---. ( -25.00) >DroPer_CAF1 382099 98 + 1 AGUCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAGCCAUGCAAUUUGACUU----AAGUGGCAAUGCAGG-CGACGUCGCUCGGCUCU .((((((((((....((((((..((((((((..((((............))))..))))))))...----..))))))))))).)-))))(((....)))... ( -32.80) >consensus AGGCGUUGCAUAAUGUGCCAUGUUUAAGUUGAUUGGCACCAAAUUUAUAG_CAUGCAAUUUGACUU____AAGUGGCAGUGCAGG_C__CGAC_C_C_G____ ...((((((.....((((((.(((......)))))))))(((((((((....))).)))))).............))))))...................... (-16.02 = -15.67 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:33 2006