Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,113,289 – 4,113,383 |
Length | 94 |
Max. P | 0.848698 |
Location | 4,113,289 – 4,113,383 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -20.04 |
Energy contribution | -19.85 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.72 |
Structure conservation index | 0.87 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4113289 94 + 22407834 AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGAUUUCGUACGAAAAUCAAA .......(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..((.((((....)))).))... ( -23.90) >DroSec_CAF1 242377 94 + 1 AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGAUUUCGUACGAAAAUGAAA ((((...(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..))))(((((......))))). ( -24.40) >DroSim_CAF1 245725 76 + 1 AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCGGCAAGGA------------------ .(((...(((((((((......)))))).(((((.....))))))))..(((((..(.....----.)..)))))..)))------------------ ( -21.80) >DroYak_CAF1 256936 85 + 1 AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAUUCGGCAAGGAUUUCGUACA--------- ((((...(((((((((......)))))).(((((.....))))))))..((((((.......----...))))))..))))........--------- ( -23.40) >DroAna_CAF1 285966 81 + 1 ----AUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU----AAAGUCAACAAGGACAAAGUUAA--------- ----...(((((((((......)))))).(((((.....)))))))).((((......))))----...(((......)))........--------- ( -19.90) >DroPer_CAF1 378943 89 + 1 AACAUCAGCGGACAUCAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUUUCUAAAAGUCAGCAAAAAGGACGAGCC--------- .......(((((((((......)))))).(((((.....)))))))).((((((((....)))).....(((.........))).))))--------- ( -24.10) >consensus AUCUAUAGCGGACAUUAUACAGGAUGUUACGCUCUAACGGAGCGCGCAGGCUGAAGUAAGUU____AAAGUCGGCAAGGAUUUCGUACA_________ .......(((((((((......)))))).(((((.....))))))))..(((((..(..........)..)))))....................... (-20.04 = -19.85 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:32 2006