Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,106,666 – 4,106,759 |
Length | 93 |
Max. P | 0.867199 |
Location | 4,106,666 – 4,106,759 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.53 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -17.38 |
Energy contribution | -17.88 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.867199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4106666 93 + 22407834 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCCA---GGCAGC-------GAGCACGCACCAG-CC----AAGGCAUAG---GG ((((((........((((((.((((....))))..))))))............(((((...---.)).))-------).)))))).((.(-(.----...))...)---). ( -23.60) >DroPse_CAF1 368679 107 + 1 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCAAGAGGCAGCCCAGGCAGCGCACGCACCCA-ACAAAAGAGCGGCCG---GG (((((((((.....((((((.((((....))))..)))))).............((..((....))..))......))))))))).(((.-.(........)...)---)) ( -27.00) >DroGri_CAF1 336973 99 + 1 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGAGCA-------ACAAAGGC-GCGCACGCACAA-CACAAAACCGAGUCAA---GU ((((((((......((((((.((((....))))..)))))).................((.-------......))-))))))))....-................---.. ( -21.60) >DroEre_CAF1 244723 97 + 1 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCGA---GGCAGC-------AAGCACGCACCAG-CCAAGGCAAGCAUAG---GG ((((((........((((((.((((....))))..))))))............(((((...---.)).))-------).))))))....(-(....))........---.. ( -23.80) >DroAna_CAF1 279102 94 + 1 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGUCCA---GGCAGC-------CAGCACGCACCAA-CA------AGCAGACGGAGG ((((((........((((((.((((....))))..))))))............(((.....---.)))..-------..)))))).((..-(.------....)..))... ( -20.40) >DroPer_CAF1 370951 107 + 1 GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCAAGAGGCAGCCCAGGCAGCGCACGCACCCA-ACAAAAGAGCGGCAG---GG (((((((((.....((((((.((((....))))..)))))).............((..((....))..))......))))))))).(((.-.(........)...)---)) ( -27.00) >consensus GCGUGCGUUUAAUAUUUAUGAGUGAUUUAUCACGAUAUAAAAAUAAUAAUAAAUGCGACCA___GGCAGC_______GAGCACGCACCAA_ACAAAACAGGCACAG___GG ((((((........((((((.((((....))))..))))))............(((.........)))...........)))))).......................... (-17.38 = -17.88 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:31 2006