Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,106,499 – 4,106,592 |
Length | 93 |
Max. P | 0.908597 |
Location | 4,106,499 – 4,106,592 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -24.54 |
Consensus MFE | -20.84 |
Energy contribution | -21.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -1.76 |
Structure conservation index | 0.85 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4106499 93 - 22407834 GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGAUGACUUUUCAUUUUACGCAAACGGUAU--UUCACGUUGCGUGUU----CACGCAGAAUCCCU ........(((((((((((((.(((....))).)))))............(((((((.((....--....)))))))))..----......)))))))) ( -26.40) >DroSec_CAF1 235716 95 - 1 GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAACGGUACUUUUCUCGUUGCGUGUU----UACGCAGAAUCCCU ........(((((((((((((.(((....))).)))))............(((((((.(((........))))))))))..----......)))))))) ( -27.90) >DroSim_CAF1 238962 95 - 1 GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAGCGGUAUUUUUCUCGUUGCCUGUU----AACGCAGAAUCCCU ........(((((((((((((.(((....))).)))))...............((.(((((((..........)))).)))----...)).)))))))) ( -23.70) >DroEre_CAF1 244552 97 - 1 GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGAAGACUUUUCAUUUAUCUCAAACGCUAUUU--UUUGUUGCGUGUUUAUUUACGCAGAAUCCGU ..........((((((.((((.(((....))).)))).............................--.....((((((......)))))))))))).. ( -19.00) >DroYak_CAF1 250012 99 - 1 GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUAACUCAAACGGUAUUUUUUUUGUUGCGUGUUUAUUCACGCAGAAUCCGC ........(..((.(((((((.(((....))).))))))).))..)............(((.((((.......((((((......))))))))))))). ( -25.71) >consensus GCAUUUUAGGGGAUUUGUCACUUUUGAAAGGAUGUGACGACUUUUCAUUUUACGCAAACGGUAUUUUUCUCGUUGCGUGUU____CACGCAGAAUCCCU ........(((((((((((((.(((....))).)))))...................................((((((......)))))))))))))) (-20.84 = -21.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:30 2006