Locus 1513

Sequence ID 2L_DroMel_CAF1
Location 4,104,055 – 4,104,153
Length 98
Max. P 0.864905
window2456

overview

Window 6

Location 4,104,055 – 4,104,153
Length 98
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 76.49
Mean single sequence MFE -18.33
Consensus MFE -11.88
Energy contribution -12.38
Covariance contribution 0.50
Combinations/Pair 1.20
Mean z-score -1.87
Structure conservation index 0.65
SVM decision value 0.84
SVM RNA-class probability 0.864905
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4104055 98 + 22407834
ACUACAUUACACAA------GAAAUGCAUUUC--UUUCAGUGCAUGCCUAAUGCCAAGUUUUAGGCCAGCAUUUUGCUGCCUUUGUUCCACCCCAUUCUCUCAUCU
..........((((------(..(((((((..--....)))))))((((((.((...)).))))))((((.....))))..))))).................... ( -18.40)
>DroSec_CAF1 233308 101 + 1
ACAACAUUUCCCAAACCCAUUUAAUGCAUUUC--UUUGAGUGCAUGCCUAAUGCCACGUUUUAGGCCAGCAUUUUGCAGCCUUUUUUCCAACCAAUUCUCC---UU
........................((((....--...((((((..((((((.((...)).))))))..)))))))))).......................---.. ( -15.61)
>DroSim_CAF1 236584 99 + 1
----CAUUUCCCAAACCCAUUAAAUGCAUUUUUUUUUGAGUGCAUGCCUAAUGCCACGUUUUAGGCCAGCAUUUUGAUGCCUUUGUUCCAACCCAUUCUCC---UU
----.......((((..((((((((((((((......))))))))((((((.((...)).)))))).......))))))..))))................---.. ( -20.30)
>DroYak_CAF1 247502 98 + 1
AUACGAUUUCCAAAAGCCAUUAAAUACAUUUC--UUUGAGUGCAUGUGUGAUGCCAAGUUUUGAGCUAGCAUUUUGCUGCCUUUGCGGCAGCCCAC---CC---UU
...............((..(((((........--)))))..))..(((.(((((..(((.....))).)))))..((((((.....)))))).)))---..---.. ( -19.00)
>consensus
ACAACAUUUCCCAAACCCAUUAAAUGCAUUUC__UUUGAGUGCAUGCCUAAUGCCAAGUUUUAGGCCAGCAUUUUGCUGCCUUUGUUCCAACCCAUUCUCC___UU
.......................((((((((......))))))))((((((.((...)).))))))((((.....))))........................... (-11.88 = -12.38 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:29 2006