Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,103,838 – 4,103,933 |
Length | 95 |
Max. P | 0.820638 |
Location | 4,103,838 – 4,103,933 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 87.02 |
Mean single sequence MFE | -21.71 |
Consensus MFE | -19.56 |
Energy contribution | -19.40 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.57 |
Structure conservation index | 0.90 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4103838 95 + 22407834 CAGUUCAGGUCUUCAGUAUUCUGGGCCUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA .......((.((...((.....(((((........))))).............((((((((.....)))))).)).......))..)).)).... ( -22.90) >DroSec_CAF1 233104 95 + 1 CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA .....................((((((..((.((((((...............)))))).....(((((..........)))))))))))))... ( -21.36) >DroSim_CAF1 236398 95 + 1 CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCAACAAAAACGUGGCCCAAAA ..(((.((((..((((....))))))))))).((.((((..............((((((((.....)))))).)).((......))))))))... ( -24.20) >DroEre_CAF1 241897 85 + 1 ----------GUGCAGUAUUCUGGGCUUAACAUGCAGCCCCGCAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCUCAAAA ----------((((........(((((........)))))((((((((................)))))))).)))).................. ( -21.29) >DroYak_CAF1 247299 80 + 1 ---------------GUAUUCUGGGCUUAACAUGCAGCCUCGCAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCUCAAAA ---------------......((((((..((.(((......))).........((((((((.....)))))).)).........))))))))... ( -18.80) >consensus CAGUUCAGGUCUCCAGUAUUCUGGGCUUAACAUGCGGCCCCACAAAGCAAAUAGCCGCAAAAUAGUUUUGCGCGCACCAAAAACGUAGCCCAAAA .....................((((((..((.(((...........)))....((((((((.....)))))).)).........))))))))... (-19.56 = -19.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:28 2006