Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,089,335 – 4,089,445 |
Length | 110 |
Max. P | 0.572891 |
Location | 4,089,335 – 4,089,445 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -22.37 |
Consensus MFE | -19.09 |
Energy contribution | -19.87 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -1.97 |
Structure conservation index | 0.85 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4089335 110 + 22407834 AUUAAAGUUUAUAGUUUGGUAAAGACCAUUGAACUUUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUGUUCUACCUUUAAUAUU ..(((((((((.(((((((.((((.((((.((((...((((..(((......))).)))).))))))))...)))))))))))..)))))))))................ ( -24.00) >DroSec_CAF1 218770 110 + 1 AUUAAAGUUUAUAGUUGGUAAAAGACCAUUGAACUCUUGCGUUCAAAAUGUAUUGUUGCAUGUUUAUGGAAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU (((((((........((((.....))))((((((......)))))).(((((....)))))((..((((((((((...........))))))))))..)))))))))... ( -19.50) >DroSim_CAF1 221626 110 + 1 AUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAACAUUUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU ...((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....))))))))................. ( -23.60) >consensus AUUAAAGUUUAUAGUUGGGAAAAGACCAUUGAACUCUUGCAUUCAAAAUGUAUUGUUGCAUGUUUAUGGGAGUUUUCCAAAUUCUUAAAUUUUCGUCUACCUUUAAUAUU ...((((((((...((((((((...((((.((((...((((..(((......))).)))).))))))))...)))))))).....))))))))................. (-19.09 = -19.87 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:22 2006