Locus 1508

Sequence ID 2L_DroMel_CAF1
Location 4,089,123 – 4,089,217
Length 94
Max. P 0.998742
window2448

overview

Window 8

Location 4,089,123 – 4,089,217
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.53
Mean single sequence MFE -22.64
Consensus MFE -20.24
Energy contribution -19.76
Covariance contribution -0.48
Combinations/Pair 1.12
Mean z-score -2.32
Structure conservation index 0.89
SVM decision value 3.21
SVM RNA-class probability 0.998742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4089123 94 - 22407834
AGUGCACUGCUUUUGCAUUUUUCCAGCAAUUUCUUUCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCGGUUCAGUUGCAUUUACUAC
(((((((((...((((.........))))........(((((((......(((((....)))))))))))).......))).))))))...... ( -22.30)
>DroSec_CAF1 218559 94 - 1
AGUGCACUGCUUUCGCAUUUUUCCAGUAAUUUCUUGCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCGGUUCAGUUGCAUUUGCUAC
(((((((((...(((..........((((....))))(((((((......(((((....))))))))))))..)))..))).))))))...... ( -23.30)
>DroSim_CAF1 221421 94 - 1
AGUGCACUGCUUUCGUAUUUUUCCAGCAAUUUCUUGCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCGGUUCAGUUGCAUUUGCCAC
(((((((((...(((..........((((....))))(((((((......(((((....))))))))))))..)))..))).))))))...... ( -25.50)
>DroEre_CAF1 226955 94 - 1
AGUGCACUGCCUUCGCAUUUUUCCAGCAAUUUCUUUCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCAGUUCAGUUGCAUUUACUAC
(((((((((.....((.........))..........(((((((......(((((....)))))))))))).......))).))))))...... ( -21.00)
>DroYak_CAF1 232107 94 - 1
AGUGCACAGCCUUCGCAUUUUUCCAGCAAUUUCUUUCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCGGUUCAGUUGCAUUUACUAC
((((((.((((...((.........))..........(((((((......(((((....))))))))))))...))))....))))))...... ( -21.10)
>consensus
AGUGCACUGCUUUCGCAUUUUUCCAGCAAUUUCUUUCGUUCAAUUCUGUUUCAGCUUCGGUUGAGUUGAACUCCGGUUCAGUUGCAUUUACUAC
(((((.........)))))......((((((.((...(((((((......(((((....))))))))))))...))...))))))......... (-20.24 = -19.76 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:21 2006