Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,085,440 – 4,085,536 |
Length | 96 |
Max. P | 0.656800 |
Location | 4,085,440 – 4,085,536 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.89 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -16.78 |
Energy contribution | -17.06 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.08 |
Structure conservation index | 0.73 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4085440 96 + 22407834 A--AAAAGGAAACUUUCUAAGGACAUGUGUGGGUGUGUGUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC .--....(((((..((((..(((...((..(((((..(((.((((((.....)))))).)))..)))))...))..))).....))))..)))))... ( -27.90) >DroSec_CAF1 214897 90 + 1 AAUAAAAGGAAACUUUGUAAGGACAUGUGU------G--UGUGUGGGAAUUUUCCGCAAAUACGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC .......(((((((((.((((((.((((((------.--..(((((((...))))))).)))))).))))))............)))))..))))... ( -24.72) >DroSim_CAF1 217821 92 + 1 AAUAAAAGGAAACUUUCUAAGGACAUGUGU------GUGUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC .......(((((..(((((((((.((((((------.....((((((.....)))))).)))))).))))).............))))..)))))... ( -21.11) >DroEre_CAF1 223350 95 + 1 AAUA-AAGGAAACUUUCUAAGGACAUGUGUG--UGUGGGUGUAUAGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC ....-..(((((..(((((((((.((((((.--((((((.............)))))).)))))).))))).............))))..)))))... ( -21.33) >DroYak_CAF1 228426 94 + 1 AAUAAAAGGAAACUUUCUAAGGACAUGUGUG--UGUG--UGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC .......(((((..(((((((((....((..--(((.--..((((((.....)))))).)))..))))))).............))))..)))))... ( -20.11) >consensus AAUAAAAGGAAACUUUCUAAGGACAUGUGUG__UGUG_GUGUGUGGAAAUUUUCCGCAAAUAUGUAUCCUUAACCAUCCAGAAAAGAGUAUUUCCCUC ....((((....)))).((((((.((((((...........(((((((...))))))).)))))).))))))........((((......)))).... (-16.78 = -17.06 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:18 2006