Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,061,819 – 4,061,920 |
Length | 101 |
Max. P | 0.965642 |
Location | 4,061,819 – 4,061,920 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -22.67 |
Consensus MFE | -17.67 |
Energy contribution | -17.87 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -3.85 |
Structure conservation index | 0.78 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4061819 101 - 22407834 AAGAUU---AAAGGGAAAAGGAA-CAGGAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ....((---(((.((.....(((-((......((((....))))....(((((.....)))))....))))).)).))))).(((((...))))).......... ( -21.70) >DroSec_CAF1 194089 99 - 1 AAGAUA---AAAGGGAAAAGG---CGGCAGCAUAAGGAAACUUCAACAGUUGCUCACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ......---............---.(((((((((((....))).....(((((.....)))))...))).))))).......(((((...))))).......... ( -20.70) >DroSim_CAF1 195615 99 - 1 AAGAUA---AAAGGGAAAAGG---CGGCAGCAUAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ......---............---.(((((((((((....))).....(((((.....)))))...))).))))).......(((((...))))).......... ( -20.70) >DroEre_CAF1 202287 99 - 1 AAGAUA---AAAGGGAAAAGG---CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ......---..........((---(((((...((((....))))....(((((.....)))))....)).))))).......(((((...))))).......... ( -24.10) >DroYak_CAF1 207272 99 - 1 AAGAUA---AAAGGGAAAAGG---CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ......---..........((---(((((...((((....))))....(((((.....)))))....)).))))).......(((((...))))).......... ( -24.10) >DroAna_CAF1 239324 105 - 1 AAGAUAAAAAAAGGCAAAAGCACCCAACAGCAGGAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ............((((((.((........)).((((....))))....(((((.....)))))......)))))).......(((((...))))).......... ( -24.70) >consensus AAGAUA___AAAGGGAAAAGG___CAGCAGCAGAAGGAAACUUCAACAGUUGCUGACAGCAACAAAAUGUUUGCCAUUUAAAAUUGCAAUGCAAUAAUACUAAAA ............((.(((..............((((....))))....(((((.....)))))......))).)).......(((((...))))).......... (-17.67 = -17.87 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:17 2006