Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,060,783 – 4,060,899 |
Length | 116 |
Max. P | 0.927638 |
Location | 4,060,783 – 4,060,899 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.62 |
Mean single sequence MFE | -19.66 |
Consensus MFE | -14.43 |
Energy contribution | -15.39 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.14 |
Mean z-score | -2.26 |
Structure conservation index | 0.73 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4060783 116 + 22407834 AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACAUUGCUCUAUACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCAAACCCAUAGCUAUCUCU ....((((((.....(((((.......)))))...(((..((.....)).)))............)))))).........((((((((................)))))))).... ( -20.49) >DroSec_CAF1 193075 114 + 1 AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--UACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCGAACCCAUAGCUAUCUCU ....((((((.....(((((.......)))))...((....))............--........)))))).........((((((((....(((...)))...)))))))).... ( -20.10) >DroSim_CAF1 194578 114 + 1 AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--UACCCAUCUCGCUCGUACUACCCGUAGCUAUCUCUUUCUGCGAACACAUAGCUAUCUCU ....((((((.....(((((.......)))))...((....))............--........)))))).........((((((((....(((...)))...)))))))).... ( -20.40) >DroEre_CAF1 201238 114 + 1 AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC--CACCUAUCUCGCUCUUACUACCCAUAGCUAUCUCUCUCAGUGAACCCAUAGCCAUCUCU ..((((((((.....(((((.......)))))...((....))............--........))))))))..........(((((...((.....))....)))))....... ( -19.50) >DroAna_CAF1 238631 91 + 1 AAAAGAGCGACACCAACUACCGAAAAUGUUGUCAUGCAUUUGCUCUACUUUUCUC--UAUCUGUCUCUUUCGCA---------GCUAGCU--------------AUGGCUGUCUCU .(((((((((((.((...........)).))))..((....))............--.....).)))))).(((---------((((...--------------.))))))).... ( -17.80) >consensus AAAAGAGCGACACCAACAACUGAAAAUGUUGUCAUGCAUUUGCUCCACUUUUCUC__UACCCAUCUCGCUCGUACUACCCAUAGCUAUCUCUUUCUGCGAACCCAUAGCUAUCUCU ....((((((.....(((((.......)))))...((....))......................)))))).........((((((((................)))))))).... (-14.43 = -15.39 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:09 2006