| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,054,269 – 4,054,359 |
| Length | 90 |
| Max. P | 0.635658 |
| Location | 4,054,269 – 4,054,359 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 78.23 |
| Mean single sequence MFE | -16.85 |
| Consensus MFE | -10.32 |
| Energy contribution | -9.88 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635658 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4054269 90 - 22407834 AA-AAAAACUUAAUUACACUUUAGAUUGGCACUUUA-AAGCCGAGAUUGAAGGCCGAAACGGAGACAGGGAAGUGAUGCACAUACAAAAGC--G------------- ..-.............((((((...(((((.(((((-(........)))))))))))...(....)...))))))..((..........))--.------------- ( -18.50) >DroPse_CAF1 291095 106 - 1 AAAAAAAACUUAAUUACACUUUAGAUUGGCACUUUCUGAGCCGAGAUUGAAGGCCGAAACGGAGACGGAGAUGGGGACUACAGAAAA-AGACCAGGAAGAAGGAAGA ..................((((...(((((..((((((.(((.........))).....((....)).....(....)..)))))).-.).))))...))))..... ( -21.00) >DroEre_CAF1 194826 90 - 1 AAAAAAAACUUAAUUACACUUUAGAUUGGCACUUUA-AAGCCGAGAUUGAAGGCCGAAACGGCGACAGGGAAGAGAUGCACAUACAA-AAA--G------------- ........(((.......((((((.(((((......-..)))))..))))))((((...)))).........)))............-...--.------------- ( -16.50) >DroWil_CAF1 286782 83 - 1 AAAAAAAACUUAAUUACACUUUAGAUUGGCACGUUG-AGACUGAGAUUGAAGGCCGAAAUGGAGACGAAGACA------AAAAACAA-GAA---------------- ..................(((((..(((((...(..-(........)..)..)))))..))))).........------........-...---------------- ( -12.00) >DroYak_CAF1 199589 91 - 1 AAAAAAAACUUAAUUACACUUUAGAUUGGCACUUUA-AAGCCGAGAUUGAAGGCCGAAACGGAGACAGGGAAGUGAUGCACAUACAA-AAAC-G------------- ................((((((...(((((.(((((-(........)))))))))))...(....)...))))))............-....-.------------- ( -18.40) >DroAna_CAF1 233127 85 - 1 AAAAAAAACUUAAUUACACUUUAGAUUGGCACUUUA-AAGCUGAGAUUGAAGGCCGAAACGGAGACAAGGAAGCGGAGA---AUCAA-AA----------------- ................(.((((...(((((.(((((-(........)))))))))))...(....)...)))).)....---.....-..----------------- ( -14.70) >consensus AAAAAAAACUUAAUUACACUUUAGAUUGGCACUUUA_AAGCCGAGAUUGAAGGCCGAAACGGAGACAGGGAAGUGAUGCACAUACAA_AAA__G_____________ ..................((((...(((((.(((((...........))))))))))...(....)))))..................................... (-10.32 = -9.88 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:07 2006