Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,052,853 – 4,052,953 |
Length | 100 |
Max. P | 0.632745 |
Location | 4,052,853 – 4,052,953 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 91.12 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -20.75 |
Energy contribution | -22.49 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.09 |
Mean z-score | -1.79 |
Structure conservation index | 0.76 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4052853 100 + 22407834 GGUUGAAUUUUCGGAAGAUUGACUGAGUUAAGAGUGGCAUGAAGUUGGGCAAUACCUAGUGGAAAAUUGCCAUUCUCUUACUUUUUAGUUGAAGAUUUUC------- ....((((((((....((((((..((((..(((((((((.....(((((.....)))))........)))))))))...)))).))))))))))))))..------- ( -24.52) >DroSec_CAF1 185283 107 + 1 GGUUGAAUUUUCGGAAGAUUGGCUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG (((((((...((....))(..((((((.....(((((((((.((((.(....).((....))..))))..)))))))))....))))))..).....)))))))... ( -29.10) >DroSim_CAF1 186708 107 + 1 GGUUGAAUUUACGGAAGAUUGACUGAGUUAAGAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG (((((((....(....).(..((((((..((((((((((((.((((.(....).((....))..))))..))))))))).)))))))))..).....)))))))... ( -29.10) >DroYak_CAF1 198167 107 + 1 GGGUGAAUUUUCGGAAGAUUGACUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCUUUGCUUUUAACUUUUAGUUGAAGAUUUUCAGCUUGG ((.((((...((....))(..((((((((((((((((((........(....).((....)).....))))..)))))))))))..)))..).....)))).))... ( -27.00) >consensus GGUUGAAUUUUCGGAAGAUUGACUGAGUUAAAAGUGGCAUGAAGUUGGGCAACACCUAGUGGAAAAUUGCCAUGCUAUUACUUUUUAGUUGAAGAUUUUCAGCUUGG (((((((...((....))(..((((((.(((((((((((.....(((((.....)))))........))))..)))))))...))))))..).....)))))))... (-20.75 = -22.49 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:06 2006