Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 62,576 – 62,669 |
Length | 93 |
Max. P | 0.623313 |
Location | 62,576 – 62,669 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.69 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -16.87 |
Energy contribution | -16.98 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -2.04 |
Structure conservation index | 0.56 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 62576 93 + 22407834 UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUUGCCGAGGCAG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA ................(((((((...(((((((((((.(((--------(((((...(....).....))))..))))...))))))))))))))----)))).. ( -32.70) >DroSec_CAF1 35344 93 + 1 UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA ................(((((((...(((..((((((((((--------.((((...(....).....))))....)))).))))))..))))))----)))).. ( -29.00) >DroSim_CAF1 37644 93 + 1 UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC----CUUCAA ................(((((((...(((..((((((((((--------.((((...(....).....))))....)))).))))))..))))))----)))).. ( -29.00) >DroEre_CAF1 41694 93 + 1 UUAUUGCUUAAGCUUGGGAGGAUUCAGUUUUGCCGAGGCCG--------UUGCAAUGCGGAAGAAAUGUGUAUAACCGGUACUUGGCAGAACAUC----CUUCAA .....((....))...(((((((...(((((((((((((((--------.((((...(....).....))))....)))).))))))))))))))----)))).. ( -35.00) >DroYak_CAF1 35047 93 + 1 UUAUUGCCUAAGCUUGGGAGGAUUGCGAUUCGCCGAGGCCG--------UUGCAAUGCGGAAGAGCUGUGUAUAACCGGUACUUGGCAGAACAUC----CUUCAA ................(((((((...(.(((((((((((((--------.((((..((......))..))))....)))).)))))).)))))))----)))).. ( -28.10) >DroPer_CAF1 47511 98 + 1 UAACUGCCA-------CCAGGAUCCAGUUCCGCUUAAUCGGGAGUCGACUCGCAAUGCGGAAGAAACUUACGCUGCUGAUUCUUGGCAGAACCUUACUGCGUCAA ...((((((-------..(((((((((((((((.....((((......))))....)))))..........))))..))))))))))))................ ( -28.20) >consensus UUAUUGCCUAAGCUUGGGAGGAUUGAGUUUCGCCGAGGCCG________UUGCAAUGCGGAAGAGAUGUGUAUAACUGGUACUUGGCAGAACAUC____CUUCAA ...(((((...((((.((.(((......))).)).))))...........((((...(....).....))))............)))))................ (-16.87 = -16.98 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:19 2006