Locus 1499

Sequence ID	2L_DroMel_CAF1
Location	4,042,021 – 4,042,113
Length	92
Max. P	0.729701

overview

Window 1

Location	4,042,021 – 4,042,113
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	84.93
Mean single sequence MFE	-15.52
Consensus MFE	-9.60
Energy contribution	-9.64
Covariance contribution	0.04
Combinations/Pair	1.20
Mean z-score	-2.35
Structure conservation index	0.62
SVM decision value	0.42
SVM RNA-class probability	0.729701
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4042021 92 - 22407834
G-GGGGAAAAUCCCUAUAACAUGGUAAAUAUAUACAUAUAUGUAUAUAAUUUGCAAACAAACUAGGCACAAACUUUUAUCUUUGCAAAUAAAU
.-((((.....)))).............((((((((....))))))))(((((((((......((.......))......))))))))).... ( -19.50)
>DroSec_CAF1 174979 87 - 1
GCGGGGAAUAUCCCUAUAACAUGGUAAAUAUAUAU----GUAUAUAUAAUUGGCAAACAAACUAGGC--AAACUUUUAUCUUUGCAAAUAAAU
..((((.....))))......((.(((.((((((.----...)))))).))).))..........((--(((........)))))........ ( -14.00)
>DroSim_CAF1 179528 87 - 1
GCGGGGAAUAUCCCUAUAGCAUGGUAAAUAUAUAU----GUAUAUAUAAUUGGCAAACAAACUAGGC--AAACUUUUAUCUUUGCAAAUAAAU
((((((.....))))...((.((((...((((((.----...)))))).(((.....))))))).))--..............))........ ( -15.10)
>DroEre_CAF1 182896 84 - 1
A-GGGAAAUAUCCCUAUAACAUG-UGCACAUA-AU----GUAUAUAUAAUUUGCAAACAAACAAGGC--AAACUUUUAUCUUUGCAAAUAAAU
(-((((....))))).....(((-((((....-.)----))))))...(((((((((.....(((..--...))).....))))))))).... ( -18.80)
>DroYak_CAF1 187140 80 - 1
A-GGGAAAUAUUCCUAUAACAUA----ACA-A-AU----GUAUAUAUAAUUUGCAAACAAACAGGCC--AAACUUUUAUCAUUGCAAAUAAAU
(-((((....)))))...((((.----...-.-))----)).......((((((((......((...--...)).......)))))))).... ( -10.22)
>consensus
G_GGGGAAUAUCCCUAUAACAUGGUAAAUAUAUAU____GUAUAUAUAAUUUGCAAACAAACUAGGC__AAACUUUUAUCUUUGCAAAUAAAU
..((((....))))..................................(((((((((......((.......))......))))))))).... ( -9.60 =  -9.64 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:05 2006