Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,019,906 – 4,020,007 |
Length | 101 |
Max. P | 0.905772 |
Location | 4,019,906 – 4,020,007 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 72.38 |
Mean single sequence MFE | -28.24 |
Consensus MFE | -13.75 |
Energy contribution | -13.45 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.42 |
Mean z-score | -1.96 |
Structure conservation index | 0.49 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4019906 101 - 22407834 CGCUAGCCCUUGAAAGUAUGCUACACUUU-UGUAGCUCAGCGAAGAAAUGAAC--CGUUUGUUCGGUUAA-----GGUAAGCUUGCAUACUUUUCAGCGCAUUCAUGCC .....((.((.((((((((((((((....-))))))...((.(((.....(((--((......)))))..-----......))))))))))))).)).))......... ( -26.52) >DroVir_CAF1 230862 104 - 1 GGC-AGCAGCUAAAAGUAUGCAAUGCUUUUUAUG-CGUACUUUGUGUCUUGGCUAUGUUUG-UGUGUAUAAAUCAAAUAACAUGGCAUACUUUUGCGCGCGUUGAUU-- ..(-(((.(((((((((((((.(((...((((((-(((((..(((((....)).)))...)-))))))))))........))).))))))))))).))..))))...-- ( -27.90) >DroSec_CAF1 153397 106 - 1 CGCUAGCCUUUGAAAGUAUGCUACACUUU-UGUAGCUCAGCGAAGAAAUGAAC--CGUUUGUUGGGUAAAAACUAAGAAGGCUUGCAUACUUUUCAGCGCAUUCAUGCC .((.(((((((...(((..((((((....-))))))(((((((((........--).))))))))......)))..))))))).))............(((....))). ( -28.10) >DroSim_CAF1 157788 106 - 1 CGCUAGUUUAUAAAAGUAUGCUACACUUC-UGUAGCUCAGCGAAGAAAUUAAC--CGUUUUAUGGGCUAAAACUAAGAAAGCUUGCAUACUUUUCAGCGCAUUCAUGCC .(((.(.....((((((((((.....(((-(.((((((((((...........--)))....)))))))......)))).....))))))))))))))(((....))). ( -24.20) >DroEre_CAF1 159890 102 - 1 CACAAGCCUUGGAAAGUAUGCUAUGCUUU-UGUAGCUCAGCGGAGAAACAAAC--CGU----UGGGUAAAAACUAAGAAGACUUGCAUACUUUUCGGCGCACACAUCUC .....((.(((((((((((((....((((-(...(((((((((.........)--)))----)))))........)))))....))))))))))))).))......... ( -33.60) >DroYak_CAF1 164190 106 - 1 CACAAGCCUUUGAAAGUAUGCUACACUUU-UGUAGCUCAGCGAAGUUAAGAAC--CGUUAGUUGGCUGAAAACUAAGAAAGCCUGCAUACUUUUCGGCGCAUUCAUCGC .....(((...((((((((((....((((-(.(((.(((((.((.((((....--..)))))).)))))...))).)))))...)))))))))).)))........... ( -29.10) >consensus CGCUAGCCUUUGAAAGUAUGCUACACUUU_UGUAGCUCAGCGAAGAAAUGAAC__CGUUUGUUGGGUAAAAACUAAGAAAGCUUGCAUACUUUUCAGCGCAUUCAUGCC .....((.((.((((((((((((((.....))))((((((((.............)))....))))).................)))))))))).)).))......... (-13.75 = -13.45 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:01 2006