Locus 1495

Sequence ID 2L_DroMel_CAF1
Location 4,013,846 – 4,013,945
Length 99
Max. P 0.585078
window2426

overview

Window 6

Location 4,013,846 – 4,013,945
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 75.75
Mean single sequence MFE -17.00
Consensus MFE -12.22
Energy contribution -11.86
Covariance contribution -0.36
Combinations/Pair 1.20
Mean z-score -1.21
Structure conservation index 0.72
SVM decision value 0.10
SVM RNA-class probability 0.585078
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4013846 99 + 22407834
UGCACUUAAUCUGGUUUCAGAUGAAACUAUCUGGUUAUCCUGUAAUUGGAUUCUAUAUAUUCAACAAAUGUAUGUUUAAUCACUAGCUGCUGCAACUAA
((((.......(((((((....))))))).(((((.((((.......))))..((((((((.....)))))))).......)))))....))))..... ( -17.80)
>DroSec_CAF1 147603 81 + 1
UACAUUUAAUCUGGAUUCAGAUGAAACUAUCUGGUUAUCCUGUAAUUGGAUUCUAUA------------------UUAAUCCCUAGCUGCUGCAACUAA
.....(((((.((((.(((((((....)))))))..((((.......)))))))).)------------------))))......((....))...... ( -13.80)
>DroSim_CAF1 152017 81 + 1
UACAUUUAAUCUGGUUUCAGAUGAAACUAUCUGGUUAUCCUGUAAUUGGAUUCUAUA------------------UUAAUCACUAGUUGCUGCAACUAA
...........(((((((....)))))))((..(((((...)))))..)).......------------------........((((((...)))))). ( -14.30)
>DroEre_CAF1 152847 96 + 1
UACAUUUAAUCAGGUUUCCGAUGAAACCAUCUGGUUAUCCUUUAAUUGGAUUUU---UAUUAAACGAAUCUAUGUUUCAUCACUUGCUGCUGCACGUUA
.((((....((.((((((....))))))(((..((((.....))))..)))...---........))....))))......((.(((....))).)).. ( -17.70)
>DroYak_CAF1 158083 96 + 1
UACAUUUAAUCAGGUUUCAGAUGAAACCAUUUGGUUAUCCAUUAAUUGGAUUUU---UAUUUAACGAAAGUGUGUUUCAUCAGGCGCUGCAGCAAUUUA
..........(((((((..(((((((((((((.((((((((.....))))....---....))))..))))).)))))))))))).))).......... ( -21.40)
>consensus
UACAUUUAAUCUGGUUUCAGAUGAAACUAUCUGGUUAUCCUGUAAUUGGAUUCUAUAUAUU_AAC_AA__U_UGUUUAAUCACUAGCUGCUGCAACUAA
............((((((....))))))(((..((((.....))))..)))..................................((....))...... (-12.22 = -11.86 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:00 2006