| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,007,010 – 4,007,113 |
| Length | 103 |
| Max. P | 0.539102 |
| Location | 4,007,010 – 4,007,113 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 93.85 |
| Mean single sequence MFE | -23.55 |
| Consensus MFE | -21.15 |
| Energy contribution | -20.90 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4007010 103 + 22407834 AUCUGACUGGUGGGAAAUGAUUGAUGUCCUCUGGUCGUAGCCAGCUUAUCAAUUAUUGUACAACUAGUGCUGUCAGUACAUAAACAUAUUUUAAGCUUUAUUA .....((((((.(..(((((((((((....(((((....)))))..)))))))))))...).))))))(((...((((........))))...)))....... ( -25.00) >DroSec_CAF1 139835 103 + 1 AUCUGACUGGCGGGAAAUGAUUGAUGUCCUCUGGUCGGAGCCAGCUUAUCAAUUAUUGUACAACUAGUGCUGUCAGUACAUAAACAUAUUUUAAGCUUUAUUA ...(((((((((...(((((((((((....(((((....)))))..)))))))))))((((.....))))))))))).))....................... ( -26.30) >DroEre_CAF1 145681 103 + 1 AUCUGACUGGUGCGAAAUGAUUGAUGUCCUUUGGUCGAAGCCAGCUUAUCAAUUAUUGUAAAACUAGUGUUGUCAGUACAUAAACAUAUUUUUAACUUUAUUA .....((((((....(((((((((((....(((((....)))))..))))))))))).....))))))((((..((((........))))..))))....... ( -21.80) >DroYak_CAF1 150745 103 + 1 AUCUGACUGGUGGGAAAUGAUUGAUGUCCUUUGGUUGGAGCCAGCUUAUCAAUUAUUGUACAACUAGGGUUGUCAGUACAUAAACAUAUUUUAAACUUUAAUA ..(((((((((.(..(((((((((((....(((((....)))))..)))))))))))...).)))).....)))))........................... ( -21.10) >consensus AUCUGACUGGUGGGAAAUGAUUGAUGUCCUCUGGUCGGAGCCAGCUUAUCAAUUAUUGUACAACUAGUGCUGUCAGUACAUAAACAUAUUUUAAACUUUAUUA .....((((((....(((((((((((....(((((....)))))..))))))))))).....))))))(((...((((........))))...)))....... (-21.15 = -20.90 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:58 2006