Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,006,225 – 4,006,321 |
Length | 96 |
Max. P | 0.795995 |
Location | 4,006,225 – 4,006,321 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.77 |
Mean single sequence MFE | -33.62 |
Consensus MFE | -22.11 |
Energy contribution | -23.92 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.13 |
Mean z-score | -1.74 |
Structure conservation index | 0.66 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4006225 96 + 22407834 CGGAGUGGGCGGCCGGUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC---CACCACGACCCAUUAUCGA ((..(((((((((.((((..(....(((((..----....))))).(((......))).......)..)))).)))))..)---)))..))............ ( -35.50) >DroVir_CAF1 211750 102 + 1 UGAUGUCGGCUCGCGCUAUCCCUCCU-AUCAACAGGAAGUGGUAGAGGUGAUCACACCAGCGGCUGUCUACCAGCCUCCGCCACCACCACGCCCCAUUGUCGA .....(((((..(((.......((((-......)))).((((..((((((....))))...(((((.....)))))))..)))).....)))......))))) ( -31.60) >DroSec_CAF1 139024 96 + 1 CGGAGUGGGCGGUCGCUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC---CACCACGACCCAUUAUCGA (((.(((((((((.(((........(((((..----....))))).(((......)))))).)))))))))...)))....---.....(((.......))). ( -33.70) >DroEre_CAF1 144846 96 + 1 CGGAGUGGGCGGCCGCUAUCCACCACCACCGC----CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCCCCAC---CACCACGACCCAUUAUCGA .((.(((((((((.(((........(((((..----....))))).(((......)))))).)))))))))...)).....---.....(((.......))). ( -33.60) >DroWil_CAF1 216473 102 + 1 UGAAGUUGGCGGCCGCUACCCACCGCCCCCAC-CUCCAGUUGUGGAGGUGAUCACUCCAGCCGCUGUCUACCAGCCACCUCCACCGCCGAGACCCAUAAUUGA .......(((((..........))))).....-(((..((.(((((((((............((((.....))))))))))))).)).)))............ ( -30.50) >DroYak_CAF1 149934 99 + 1 CGGAGUGGGCGGCCGCUAUCCACCACCGCCGC----CCAUGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCUCCACCACCACCACGACCCAUCAUCGA .((.(((((((((.(..........).)))))----))))(((((((((......))).((((........)))).)))))).))....(((.......))). ( -36.80) >consensus CGGAGUGGGCGGCCGCUAUCCACCACCACCGC____CCAGGGUGGAGGUCAUCACACCAGCUGCCGUCUACCAGCCGCCAC___CACCACGACCCAUUAUCGA .((.(((((((((.(((.((((((................))))))(((......)))))).)))))))))...))........................... (-22.11 = -23.92 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:57 2006