Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,992,566 – 3,992,656 |
Length | 90 |
Max. P | 0.821412 |
Location | 3,992,566 – 3,992,656 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -19.30 |
Consensus MFE | -15.26 |
Energy contribution | -15.26 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.79 |
Structure conservation index | 0.79 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3992566 90 + 22407834 CCGUGCGGUUUUCUCUCACAUUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU ....((((.......((((((....(((((((((.......))))))))).))).))).....((((((....)))))).))))...... ( -18.90) >DroSec_CAF1 125571 90 + 1 CCGUGCGCCUUACUCUCACACUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU ..((((((.......(((.((....(((((((((.......)))))))))...)))))....((((....)))))))))).......... ( -20.00) >DroSim_CAF1 130152 90 + 1 CCGUGCGCUUUGCUCUCACACUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU ..((((((((.((..............(((((((.......)))))))((((........))))......)))))))))).......... ( -20.40) >DroEre_CAF1 130893 90 + 1 CCGGAGGCUUUUCUCUCACAUUCCCUUGCUGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUCAU ..((((((.......((((((....((((..(((.......)))..)))).))).))).....((((((....))))))...)))))).. ( -19.80) >DroYak_CAF1 134331 90 + 1 CCGGAGGCUUUUCUCUCACAUUCUCUUGCUGAAGCUGGCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU .((((.((.......(((((......)).))).(((.((.......((((((........))))))....)).))))).))))....... ( -17.40) >consensus CCGUGCGCUUUUCUCUCACAUUCUCUUGCCGAAACUUUCUCUUUUGGCAACAUGUUGAUUUGUUGCACUUGCAAGUGCAUUCGUUUUUAU ...............((((((....(((((((((.......))))))))).))).))).....((((((....))))))........... (-15.26 = -15.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:52 2006