Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,980,733 – 3,980,831 |
Length | 98 |
Max. P | 0.975687 |
Location | 3,980,733 – 3,980,831 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -32.27 |
Consensus MFE | -27.74 |
Energy contribution | -28.58 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.19 |
Mean z-score | -2.67 |
Structure conservation index | 0.86 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975687 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3980733 98 + 22407834 UCCGUCCGU-UGGGUAACAAUUCUCUGCAGGUGGCAGGAAAAAACUGGGAAAAUGUCCCACGAGAGAUGGCCACUCAAAGAUACCCUGGAAAUUAGAAA ....((((.-.(((((.......(((...((((((..........(((((.....)))))(....)...))))))...))))))))))))......... ( -27.31) >DroSec_CAF1 113823 98 + 1 UCCGUCCGU-UGGGUAACAAUUCUCUGCAGGUGGCAGGGAAACACUGGGAAAAUGUCCCAGGAGAGAUGGCCACUCAGAGAUACCCUGGAAAUUAGAAA ....((((.-.(((((.....((((((..((((((..(....).((((((.....))))))........)))))))))))))))))))))......... ( -38.60) >DroSim_CAF1 118341 98 + 1 UCCGUCCGU-UGGGUAACAAUUCUCUGCAGGUGGCAGGGAAACACUGGGAAAAUGUCCCAGGAGAGAUGGCCACUCAGAGAUACCCUGGAAAUAAGAAA ....((((.-.(((((.....((((((..((((((..(....).((((((.....))))))........)))))))))))))))))))))......... ( -38.60) >DroEre_CAF1 119030 98 + 1 UCCGUCCGU-UGGGUAGCAAUUCUCUGCUGGUGGCAGGGAAAAACUGGGAAAAUGUCCCCGGAGAGAUGGCCACUCAGAGAUACCCUGGAAAUUAGAAA ....((((.-.(((((.....((((((..((((((.........(((((........))))).......)))))))))))))))))))))......... ( -33.39) >DroYak_CAF1 122371 98 + 1 UCCGUCCGU-UGGGUAGAAAUUCUCUGCAGGUGGCAGGGAAAAACUGGGAAAAUGUCCCAGGAGAGAUGGCCACUUGGAGAUACCCUGGAAAUUAGAAA ....((((.-.(((((.......(((.((((((((.........((((((.....))))))........)))))))).))))))))))))......... ( -36.64) >DroAna_CAF1 135112 98 + 1 UCCGGCCGAAUGGAAAACAAAUCUGUGCAGUUGGCAGGCUAA-AUGGUGAAAAGGUCCUCGGAGAGAUGGCCACUUAGAGAUACCCUGAAAAUUAGAAG .((.(((((...(...(((....))).)..))))).))((((-..........((((.((.....)).))))..((((.......))))...))))... ( -19.10) >consensus UCCGUCCGU_UGGGUAACAAUUCUCUGCAGGUGGCAGGGAAAAACUGGGAAAAUGUCCCAGGAGAGAUGGCCACUCAGAGAUACCCUGGAAAUUAGAAA ....((((...(((((.....((((((..((((((.........((((((.....))))))........)))))))))))))))))))))......... (-27.74 = -28.58 + 0.84)
Location | 3,980,733 – 3,980,831 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -22.92 |
Energy contribution | -24.28 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.14 |
Mean z-score | -2.27 |
Structure conservation index | 0.82 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3980733 98 - 22407834 UUUCUAAUUUCCAGGGUAUCUUUGAGUGGCCAUCUCUCGUGGGACAUUUUCCCAGUUUUUUCCUGCCACCUGCAGAGAAUUGUUACCCA-ACGGACGGA .........(((.(((((((((((.(((((.........(((((.....)))))..........)))))...)))))).....))))).-..))).... ( -27.51) >DroSec_CAF1 113823 98 - 1 UUUCUAAUUUCCAGGGUAUCUCUGAGUGGCCAUCUCUCCUGGGACAUUUUCCCAGUGUUUCCCUGCCACCUGCAGAGAAUUGUUACCCA-ACGGACGGA .........(((.(((((((((((.(((((.......(((((((.....)))))).).......)))))...)))))).....))))).-..))).... ( -33.94) >DroSim_CAF1 118341 98 - 1 UUUCUUAUUUCCAGGGUAUCUCUGAGUGGCCAUCUCUCCUGGGACAUUUUCCCAGUGUUUCCCUGCCACCUGCAGAGAAUUGUUACCCA-ACGGACGGA .........(((.(((((((((((.(((((.......(((((((.....)))))).).......)))))...)))))).....))))).-..))).... ( -33.94) >DroEre_CAF1 119030 98 - 1 UUUCUAAUUUCCAGGGUAUCUCUGAGUGGCCAUCUCUCCGGGGACAUUUUCCCAGUUUUUCCCUGCCACCAGCAGAGAAUUGCUACCCA-ACGGACGGA .........(((.(((((((((((.(((((..........((((.....))))...........)))))...)))))).....))))).-..))).... ( -29.70) >DroYak_CAF1 122371 98 - 1 UUUCUAAUUUCCAGGGUAUCUCCAAGUGGCCAUCUCUCCUGGGACAUUUUCCCAGUUUUUCCCUGCCACCUGCAGAGAAUUUCUACCCA-ACGGACGGA .........(((.(((((((((((.(((((........((((((.....)))))).........))))).))..)))).....))))).-..))).... ( -28.63) >DroAna_CAF1 135112 98 - 1 CUUCUAAUUUUCAGGGUAUCUCUAAGUGGCCAUCUCUCCGAGGACCUUUUCACCAU-UUAGCCUGCCAACUGCACAGAUUUGUUUUCCAUUCGGCCGGA ..............((((...((((((((.......((....))........))))-))))..))))..(.((...((..((.....)).)).)).).. ( -14.26) >consensus UUUCUAAUUUCCAGGGUAUCUCUGAGUGGCCAUCUCUCCUGGGACAUUUUCCCAGUUUUUCCCUGCCACCUGCAGAGAAUUGUUACCCA_ACGGACGGA .............(((((((((((.(((((........((((((.....)))))).........)))))...)))))).....)))))........... (-22.92 = -24.28 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:49 2006