Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,980,416 – 3,980,507 |
Length | 91 |
Max. P | 0.926651 |
Location | 3,980,416 – 3,980,507 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.51 |
Mean single sequence MFE | -27.26 |
Consensus MFE | -25.60 |
Energy contribution | -24.96 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.36 |
Structure conservation index | 0.94 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3980416 91 - 22407834 GCAACGACUGGGUAUGGGGAAAACUCGGAGAAAACCCUGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC ....(((((((((.((((.....(((((........)))))....)))).)))))))))..............((((........)))).. ( -31.70) >DroSec_CAF1 113507 91 - 1 GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCUCAGUUCCACUUUUGUUUCGAGUCGCUGAGCCACGACAC ........(((((.((((.....))))......)))))(((....))).((((((((...((((.......)))).))))))))....... ( -27.70) >DroSim_CAF1 118025 91 - 1 GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC (((...(((((((.((((.....(..((.......))..).....)))).)))))))))).............((((........)))).. ( -27.30) >DroEre_CAF1 118714 91 - 1 AAAAAGAUUGGGAAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGCGUCGCUGAGCCACGACAC .....(((((((..((((.....(..((.......))..).....))))..)))))))...............((((........)))).. ( -25.90) >DroYak_CAF1 122052 91 - 1 AAAAAAAUUGGGAAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUUGCUGAGCCACGACAC .....(((((((..((((.....(..((.......))..).....))))..)))))))((((((.......))).)))............. ( -23.70) >consensus GCAAAGAUUGGGUAUGGGGAAAACUCGGAGAAAACCCAGGGAAAACCCAGGCCCAGUUGCACUUUUGUUUCGAGUCGCUGAGCCACGACAC .....(((((((..((((.....((.((.......)).)).....))))..)))))))...............((((........)))).. (-25.60 = -24.96 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:47 2006