Locus 1484

Sequence ID 2L_DroMel_CAF1
Location 3,974,944 – 3,975,047
Length 103
Max. P 0.975714
window2412

overview

Window 2

Location 3,974,944 – 3,975,047
Length 103
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 76.17
Mean single sequence MFE -23.26
Consensus MFE -13.29
Energy contribution -14.35
Covariance contribution 1.06
Combinations/Pair 1.17
Mean z-score -2.40
Structure conservation index 0.57
SVM decision value 1.76
SVM RNA-class probability 0.975714
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3974944 103 + 22407834
---------UGUUUUAAUACUCUUACAACUGUCCAUUGGAAAUAUUCAAUUA----UCAAAGGACAGAUCUUAUAGAUUAUUUUUUCUCUGUGUAGGAUGCUGCACAGACAGACAG
---------(((((.((((.(((.....((((((.((((.(((.....))).----)))).)))))).......))).)))).....(((((((((....))))))))).))))). ( -27.10)
>DroSec_CAF1 108060 98 + 1
---------UUUUGUAAUACUCUUACAACUGUCUAUUGGAAAUAUUCAAUUAACACUCAAAGGAC--AUCUUACAGAUUAUUUUCUCUCUGUGUAGGUUGCUGCACAGA-------
---------.(((((((...((((.....(((..((((((....))))))..))).....)))).--...)))))))..........(((((((((....)))))))))------- ( -22.10)
>DroSim_CAF1 110749 98 + 1
---------UGUUUUAAAACUCUUACAACUGUUCAUUGGAAAUAUUCUAUGAACACUCAAAGGAC--AUCUUACAGAUUAUUUUCUCUCUGUGUAGGCUGCUGCACAGA-------
---------...........((((.....(((((((.(((.....)))))))))).....)))).--.......(((......))).(((((((((....)))))))))------- ( -20.50)
>DroYak_CAF1 116455 106 + 1
UGUACCCAAUUAUAUAAUAUCCUUACAACUGUCUAGUA-AAAUGUUCAAUAAAUGGUGAAAGAAC--AUCUGACAGCAUAUUUUCUUUCUGUGCAGGGUGCUGCACAGA-------
............................(((((.((..-..((((((..............))))--)))))))))...........(((((((((....)))))))))------- ( -23.34)
>consensus
_________UGUUUUAAUACUCUUACAACUGUCCAUUGGAAAUAUUCAAUUAACACUCAAAGGAC__AUCUUACAGAUUAUUUUCUCUCUGUGUAGGAUGCUGCACAGA_______
............................((((.(((((((....)))))))........((((.....))))))))...........(((((((((....)))))))))....... (-13.29 = -14.35 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006