Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,973,117 – 3,973,208 |
Length | 91 |
Max. P | 0.999884 |
Location | 3,973,117 – 3,973,208 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.84 |
Mean single sequence MFE | -25.88 |
Consensus MFE | -24.90 |
Energy contribution | -25.10 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.86 |
Structure conservation index | 0.96 |
SVM decision value | 4.37 |
SVM RNA-class probability | 0.999884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3973117 91 + 22407834 UUUGCUUGUUUAUCUGUGCGAGUUUUGU--GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...((((((........))))))...((--((((((...(((((((...........((((...)))))))))))...))))))))....... ( -26.40) >DroSim_CAF1 108958 91 + 1 UUUGCUUGUUUAUCUGUGCGAGUUUUGU--GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...((((((........))))))...((--((((((...(((((((...........((((...)))))))))))...))))))))....... ( -26.40) >DroEre_CAF1 111381 90 + 1 UUUGCUUGUUUAUCUGUGCGAGUUUUGU---UGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...(((....((((((((((((((....---.)))))))(((((.((..........)).)))))..)))))))....)))............ ( -25.70) >DroYak_CAF1 114654 93 + 1 UUUGCUUGUUUAUCUGUGCGAGUUUUGUGUGUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...((((((........))))))...((((((((((...(((((((...........((((...)))))))))))...))))))))))..... ( -29.00) >DroAna_CAF1 126904 93 + 1 UUUGCUUGUUUAUCUGUGCGAGUUUUGUGUGUGCCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...((((((........))))))...(((((((.((...(((((((...........((((...)))))))))))...)).)))))))..... ( -21.90) >consensus UUUGCUUGUUUAUCUGUGCGAGUUUUGU__GUGGCUCGUGUGUCUGAUUUAAUUAUUUCUGACACAGACAGAUACUUUAGCCACAUGCCAACA ...(((....((((((((((((((........)))))))(((((.((..........)).)))))..)))))))....)))............ (-24.90 = -25.10 + 0.20)
Location | 3,973,117 – 3,973,208 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 97.84 |
Mean single sequence MFE | -20.11 |
Consensus MFE | -19.76 |
Energy contribution | -19.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.98 |
SVM decision value | 3.47 |
SVM RNA-class probability | 0.999264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3973117 91 - 22407834 UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC--ACAAAACUCGCACAGAUAAACAAGCAAA ............(((....(((((((.((((((.((..........)).))))))((((....--......)))).)))))))....)))... ( -19.70) >DroSim_CAF1 108958 91 - 1 UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC--ACAAAACUCGCACAGAUAAACAAGCAAA ............(((....(((((((.((((((.((..........)).))))))((((....--......)))).)))))))....)))... ( -19.70) >DroEre_CAF1 111381 90 - 1 UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCA---ACAAAACUCGCACAGAUAAACAAGCAAA (((((((.((((((....))...((((((..................)))))))))).))))---)))......((............))... ( -20.87) >DroYak_CAF1 114654 93 - 1 UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCACACACAAAACUCGCACAGAUAAACAAGCAAA ............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... ( -19.50) >DroAna_CAF1 126904 93 - 1 UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGGCACACACAAAACUCGCACAGAUAAACAAGCAAA ............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... ( -20.80) >consensus UGUUGGCAUGUGGCUAAAGUAUCUGUCUGUGUCAGAAAUAAUUAAAUCAGACACACGAGCCAC__ACAAAACUCGCACAGAUAAACAAGCAAA ............(((....(((((((.((((((.((..........)).))))))((((............)))).)))))))....)))... (-19.76 = -19.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:45 2006