Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,970,222 – 3,970,331 |
Length | 109 |
Max. P | 0.737076 |
Location | 3,970,222 – 3,970,331 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -36.20 |
Consensus MFE | -27.46 |
Energy contribution | -28.86 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.06 |
Mean z-score | -1.88 |
Structure conservation index | 0.76 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3970222 109 - 22407834 GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGCUAGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCUUGUGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA ((((((.(((.((.((((((((((.((..(((((...))))).)).)))))))))).))......))).)))))).......(((((((((.....))))))))).... ( -37.40) >DroSec_CAF1 103452 109 - 1 GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCGAGCGCAUGUAUAUGGAGUAUCUGUGUGAAGUUA ...((((....((.(((((((.((.....(((.(((((((((((((((..((....))..)))....))))..))))))))))).....)).))))))).))..)))). ( -35.80) >DroSim_CAF1 105965 109 - 1 GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGCGUGCGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA (((.((..((.(((((((((((((.((..(((.......))).)).)))))))))((((((((((.......)))).)))))).......)))).)).)).)))..... ( -39.40) >DroEre_CAF1 108384 107 - 1 GCCAACUCGAAACUCAGCUGCACCUGCUUCAUUGUGCUCGUGCGCUGGAGUAUCUGUGUGCCCCAUUGUGACUGU--GUGCAUGUGUAUGAAGUAUCUGUGUGCAGUUA ...............(((((((((((((((((...((.(((((((.(.(((....(((.....)))....))).)--))))))).))))))))))...).)))))))). ( -33.50) >DroYak_CAF1 111625 107 - 1 GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUGGUGCGCUGGAGUAUCUGUGUGCCUCAUUGUGAUUGU--GUGUAUGUAUAUGGAGUAUCUGUGUGCAGUUA (((.((..((.((((.((((((((.((........)).)))))))).)))).)).)).))).......(((((((--(..((.((((.....)))).))..)))))))) ( -34.90) >consensus GCAAACUCGAAACUCAGGUGCACCUGCUUCAUUGUGUUCGUGCGCUGGUGUAUCUGUGUGCCGCAUUGUGUUUGC__GUGCAUGUAUAUGGAGUAUCUGUGUGCAGUUA ((((((.(((.((.((((((((((.((..(((.......))).)).)))))))))).))......))).)))))).......(((((((((.....))))))))).... (-27.46 = -28.86 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:44 2006