Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,966,624 – 3,966,716 |
Length | 92 |
Max. P | 0.551169 |
Location | 3,966,624 – 3,966,716 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.09 |
Mean single sequence MFE | -21.39 |
Consensus MFE | -13.92 |
Energy contribution | -13.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.551169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3966624 92 + 22407834 AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUACGCCAGCCACC-----------CC-- ..(((.....((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))........))).......-----------..-- ( -20.32) >DroPse_CAF1 155797 99 + 1 AGGG----A-AAAAAACGUGGAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGCUCUGAUUUUUGGUAA-CCUCCCAAAGACCACUCC-U .(((----(-.......(((((((((((((((...((..((((.....)))))).))))))))))).........(((((((...-....))))))))))))))-) ( -25.61) >DroEre_CAF1 104657 92 + 1 AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCAACCACC-----------CC-- ..(((.((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))...)))).))).......-----------..-- ( -21.60) >DroWil_CAF1 154369 82 + 1 -----------GAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUGGCCUCGCACA-----------C-AC -----------..((((((-((((((((((((...((..((((.....)))))).)))))))))).......))))))))...........-----------.-.. ( -16.61) >DroYak_CAF1 107889 92 + 1 AGGGCCAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCAACCACC-----------CC-- ..(((.((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))...)))).))).......-----------..-- ( -21.60) >DroAna_CAF1 120605 93 + 1 CGGGCAAAAAAGAAAAAGU-CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCU-CCACC-----------UCCC .(((((((((((((...((-.(((((((((((...((..((((.....)))))).))))))))))))).))))..))))).))))-.....-----------.... ( -22.60) >consensus AGGGCCAAAAAGAAAAAGU_CAAGUGGAAAUUCAAUGAUGCCAUUAAUUGGCCAAAGUUUUCACUUAUGUUCUGAUUUUUCGCCA_CCACC___________CC__ .....................(((((((((((...((..((((.....)))))).)))))))))))........................................ (-13.92 = -13.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:43 2006