Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,964,025 – 3,964,120 |
Length | 95 |
Max. P | 0.985174 |
Location | 3,964,025 – 3,964,120 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 94.63 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -19.90 |
Energy contribution | -19.35 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.16 |
Mean z-score | -3.54 |
Structure conservation index | 0.81 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3964025 95 + 22407834 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG-GCCAUUCGUUCAAUAUUGAAUGUGCU--CGCAAUAAAUGUAAUGACUG ...((((..(((((((((....))))))))).............(((((-((((((((........)))))).)))--)))).....))))....... ( -26.50) >DroVir_CAF1 158395 95 + 1 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCGAAUAGAAAAUCCUUGUGG-GCCAUUCAUGCAAUAUUGAAUGUGUU--CGCAAUAAAUGUAAUGACUG ...((((..(((((((((....)))))))))............((((((-((((((((........)))))).)))--)))))....))))....... ( -22.60) >DroPse_CAF1 151163 98 + 1 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGGGGCCAUUCAUUCAAUAUUGAAUGUGCUCUCGCAAUAAAUGUAAUGACUG ...((((..(((((((((....))))))))).............((((((((((((((........)))))).)).)))))).....))))....... ( -26.70) >DroGri_CAF1 145493 95 + 1 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCUUGUGG-GCCAUUCAUUCAAUAUUAAAUGUGUU--CGCAAUAAAUGUAAUGACUA ...((((..(((((((((....)))))))))............((((((-((((((.(........).)))).)))--)))))....))))....... ( -17.10) >DroAna_CAF1 117568 95 + 1 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG-GCCAUUCAUUCAAUAUUGAAUGUGCU--CGCAAUAAAUGUAAUGAUUG ...((((..(((((((((....))))))))).............(((((-((((((((........)))))).)))--)))).....))))....... ( -27.20) >DroPer_CAF1 149099 98 + 1 AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGGGGCCAUUCAUUCAAUAUUGAAUGUGCUCUCGCAAUAAAUGUAAUGACUG ...((((..(((((((((....))))))))).............((((((((((((((........)))))).)).)))))).....))))....... ( -26.70) >consensus AAAUGCAAAUGAAAUUGAAUUGUUAAUUUCAAAUAGAAAAUCCAUGCGG_GCCAUUCAUUCAAUAUUGAAUGUGCU__CGCAAUAAAUGUAAUGACUG ...((((..(((((((((....))))))))).............((((..((((((((........)))))).))...)))).....))))....... (-19.90 = -19.35 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:42 2006