Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 435,400 – 435,496 |
Length | 96 |
Max. P | 0.934957 |
Location | 435,400 – 435,496 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.98 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.18 |
Energy contribution | -24.76 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.72 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 435400 96 + 22407834 CCACGAUACGUAGUUCGUAGUUGGACCUCU---------------------GUGAGGUCUGGGGUCUCGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU ((((((((((.....)))).(..((((((.---------------------..))))))..).(((..(((((.((.((((((...)))))).))))))).)))..))).))).... ( -31.50) >DroSec_CAF1 12748 93 + 1 CCACGAUACGUAGUUCU---UUGGACCUCU---------------------CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU (((((((.((.....((---(..((((((.---------------------..))))))..))).(..(((((.((.((((((...)))))).)))))))..))))))).))).... ( -35.60) >DroSim_CAF1 11849 93 + 1 CCACGAUACGUAGUUCU---UUGGACCUCU---------------------CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUAGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU (((((((.((.....((---(..((((((.---------------------..))))))..))).(..(((((((((((((...))))))))...)))))..))))))).))).... ( -33.90) >DroEre_CAF1 12810 112 + 1 -CGCGAUC-GUAGUUCU---UUGGACCUCGCUGGGGUCUGGGUUCUGGGGUCUGGGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAGCGAUCGUUCGACUUUGGCGAUUGUUGGAACG -.......-...(((((---...(((.((((..(((((.(((..(..((.((..(...)..)).))..)..)))((.((((((...)))))).)))))))..))))..)))))))). ( -42.90) >DroYak_CAF1 12389 73 + 1 -CACGAUCCACAGUUC-------------------------------------------UGUGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGCUGGAACU -(((((((((((....-------------------------------------------))))(.(..(((((.((.((((((...)))))).)))))))..))))))).))..... ( -25.10) >consensus CCACGAUACGUAGUUCU___UUGGACCUCU_____________________CUGAGGUCUGGGGUCUGGGGUCUGAUCGAUCGAAUCGAUCGUUCGACUUUGGCGAUUGUUGGAACU ............((((....(..((((((........................))))))..).(.((..((((.((.((((((...)))))).))))))..)))........)))). (-24.18 = -24.76 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:27 2006