Locus 1477

Sequence ID 2L_DroMel_CAF1
Location 3,942,752 – 3,942,871
Length 119
Max. P 0.596052
window2403

overview

Window 3

Location 3,942,752 – 3,942,871
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.11
Mean single sequence MFE -35.72
Consensus MFE -27.74
Energy contribution -28.46
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.596052
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3942752 119 + 22407834
GAAAUUUGGUCAGUUUUUG-GACAGCUCUUGACGGCUGCGAACCGCAUUUGGGCCGCAGAUUAAUUGGGGAUUGUUUCGGUAUUGAUUUAUUGGCGUUUCAAAAGAGAUUGCUAUCAGCC
((.....(((((((.(..(-(((((..((..(...(((((..(((....)))..))))).....)..))..))))))..).)))))))...(((((((((....)))).))))))).... ( -31.70)
>DroSec_CAF1 75928 119 + 1
GAAGUUUGGUCAGUUUUUG-GACAGCUCUUGACGGCUGCGAACCGCAUUUGGGUCGCAGAUUAAUUGGCGAUUGUUUCUGAAUUGAUAUGUUGGCGUUUCGAAAGAGAUUGCCAUCAUCC
........((((((((..(-((((((.((......((((((.(((....))).)))))).......)).).))))))..))))))))(((.(((((((((....)))).))))).))).. ( -38.72)
>DroSim_CAF1 74835 119 + 1
GAAGUUUGGUCAGUUUUUG-GACAGCUCUUGACGGCUGUGAACCGCAUUUGGGUCGCAGAUUAAUUGGGGAUUGUUUGGGAAUUGAUAUGUUGGCGUUUCGAAAGAGAUUGCUAUCAGAC
...((((((((((((((..-(((((..((..(...((((((.(((....))).)))))).....)..))..)))))..)))))))))....(((((((((....)))).))))).))))) ( -44.90)
>DroEre_CAF1 80381 112 + 1
--------GUCAGUUUUUGGGACAGCUCUUGACGGCUGCGAACCGCAUUUGGGCCGCAGAUUAAUUGGGGAUUGUUUGGGAAUUGAUUUAUUGGCGUUUCAAAAGAGAUUGCUAUCAGCC
--------(((((((((..(.((((..((..(...(((((..(((....)))..))))).....)..))..)))))..)))))))))....(((((((((....)))).)))))...... ( -34.60)
>DroYak_CAF1 82823 119 + 1
GAAAUUUGGUCAGUUUUUG-GAUAGCUCUUGACGGCUGCGAACCGCAUUUCGUCAGCAGAUUAAUUGGGGAUUGUUACGGAAUUGAUUUAUUGGCGUUUCGAACGAGUUUGCUAGCAGCC
..(((((.(((((((((..-(.(((((.(((((((.((((...))))..))))))).)).))).)..)))))))..)).)))))........((((((.((((....))))..))).))) ( -28.70)
>consensus
GAAAUUUGGUCAGUUUUUG_GACAGCUCUUGACGGCUGCGAACCGCAUUUGGGCCGCAGAUUAAUUGGGGAUUGUUUCGGAAUUGAUUUAUUGGCGUUUCGAAAGAGAUUGCUAUCAGCC
........(((((((((...(((((..((..(...(((((..(((....)))..))))).....)..))..)))))..)))))))))....(((((((((....)))).)))))...... (-27.74 = -28.46 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:38 2006