| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,942,001 – 3,942,204 |
| Length | 203 |
| Max. P | 0.960033 |
| Location | 3,942,001 – 3,942,112 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -38.16 |
| Consensus MFE | -14.26 |
| Energy contribution | -13.98 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3942001 111 - 22407834 GCAUGG---CCAGAGGAAAACCGUCGAAAACGAGGGGAAAAUGUGAAGGGUGGUCUGGACGGCGGAACAGAAGGUGUC----CGACCGCCCGCCGGCCAUGUGAAGUUCAUAAAGCUA ((((((---((.........((.(((....))).))...........((((((((.(((((.(.........).))))----)))))))))...))))))))..((((.....)))). ( -47.10) >DroSec_CAF1 75175 111 - 1 ACAAGG---CCAGAGAAAAACCAUGGAAAACGGGGGGAAAAUGUGAAGGGUAGUCUGGACGGCGGAACAGAAGGUGAC----CGACCGCCCGCCGGCCAUGUGAAGUUCAUAAAGCUA ....((---(....(((...((((((....(((.(((.....((..(((....)))..))(((((.((.....))..)----)).)).))).))).))))).)...))).....))). ( -30.40) >DroSim_CAF1 74092 111 - 1 GCAAGG---CCAGAGGAAAACCGUGGAAAACGGGGGGAAAAUGUGAAGGGUGGUCUGGACGGCGGAACAGAAGGUGUC----CGACCGCCCGCCGGCCAUGUGAAGUUCAUAAAGCUA ((..((---((.........((((.....))))..............((((((((.(((((.(.........).))))----)))))))))...)))).((((.....))))..)).. ( -43.30) >DroEre_CAF1 79636 113 - 1 GCGAGGCCACCAGAGGAAAACUGUGGAAAGCA-GGGAAAAAUGCGAGGGGUGCUGUGGUCGGCGGAACAGAAGGUGUC----CGACCGCCCGCCGGCCAUGUGAAGUUCAUAAAGCUA ((..((((.(((.((.....)).)))...(((-........)))....((((..((((((((....((.....))..)----))))))).)))))))).((((.....))))..)).. ( -41.20) >DroAna_CAF1 95953 97 - 1 GCAGUG---GCAGUGGAG----GUAGAGGAC---GGGUAUGUGCCAAG--U--------GGACGGAACCGAAGGUGUCCAACCGACCGCCCGCCGGUCAUGUGAAGUUCAUAAAACC- .....(---((.((((.(----((...((((---((((.(((.((...--.--------)))))..))).....))))).)))..))))..)))(((..((((.....))))..)))- ( -28.80) >consensus GCAAGG___CCAGAGGAAAACCGUGGAAAACG_GGGGAAAAUGUGAAGGGUGGUCUGGACGGCGGAACAGAAGGUGUC____CGACCGCCCGCCGGCCAUGUGAAGUUCAUAAAGCUA ............................................................(((((.......(((.........)))..)))))(((..((((.....))))..))). (-14.26 = -13.98 + -0.28)
| Location | 3,942,112 – 3,942,204 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 74.81 |
| Mean single sequence MFE | -30.88 |
| Consensus MFE | -13.70 |
| Energy contribution | -15.08 |
| Covariance contribution | 1.38 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.44 |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.960033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3942112 92 - 22407834 GCCGCCCCAUGCAAAUACGCACAUGCUGUGGCCGCCCGGCCAA-AGGGAGAAGUUCUGGGAUACCUGGAAAAGG---AAAGGAAUGCCCAGGCAAG (((..(((.(((......))).......(((((....))))).-.)))........((((((.(((........---..))).)).)))))))... ( -29.90) >DroSec_CAF1 75286 93 - 1 GCCGCCCCAUGCAAAUACGCACAUGCUGUGGACGCCCGGCCAAAAGUGAGAAGUUCUGGGAAACCUGGAAAAGG---AAAGGAAUGGCCGGGCAGG .((((..((((..........))))..))))..(((((((((...........((((((....)).))))....---.......)))))))))... ( -36.15) >DroSim_CAF1 74203 93 - 1 GCCGCCCCAUGCAAAUACGCACAUGCUGUGGCCGCCCGGCCAAAAGGGAGAAGUUCUGGGAAACCUGGAAAAGG---AAAGGAAUGGCCGGGCAGG (((((..((((..........))))..))))).(((((((((...........((((((....)).))))....---.......)))))))))... ( -39.05) >DroEre_CAF1 79749 77 - 1 GCUGCCCCAUGCAAAUACGCACAUG--------------CCA--AGGGAGCAUUUCAGGAAAGCCUGGAAAGUG---AAAGAAAUGGCAAGGCAAG ..((((...(((......)))..((--------------(((--.....((.(((((((....))))))).)).---.......))))).)))).. ( -22.72) >DroAna_CAF1 96050 91 - 1 UCUGUUCCAUGCAAAUACGCACAUGCGGUGGC-GGUUGGCCA--AGGGAAAAGGUCAGAGAAAACUGUACCAGGGGGGCAGAGAUGGCG--GAGAG ((((((((.(((......)))..((((((...-..((((((.--........)))))).....)))))).....)))))))).......--..... ( -26.60) >consensus GCCGCCCCAUGCAAAUACGCACAUGCUGUGGCCGCCCGGCCAA_AGGGAGAAGUUCUGGGAAACCUGGAAAAGG___AAAGGAAUGGCCAGGCAAG (((..(((.(((......))).......(((((....)))))...))).....((((((.....))))))....................)))... (-13.70 = -15.08 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:37 2006