Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,911,245 – 3,911,338 |
Length | 93 |
Max. P | 0.740878 |
Location | 3,911,245 – 3,911,338 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -36.17 |
Consensus MFE | -19.38 |
Energy contribution | -19.77 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.22 |
Mean z-score | -1.95 |
Structure conservation index | 0.54 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740878 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3911245 93 - 22407834 AGGGUCAAGCAGCAAUUCG---------AACGAGAAUAACUACAGUAAUGCCAGGGAUCUGUCGCAGGAGGCAUUGUGGCGCCUCCAAAUGGCCACCGCCCA .((((...(.((..((((.---------.....))))..)).)......((((.(((..((((((((......))))))))..)))...))))....)))). ( -27.90) >DroPse_CAF1 74574 93 - 1 AGGGUCGAGCAACAAUUCG---------AAUGAGAACAACUACAGCAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGGCUCCAAUUGGUUGCGGCCCA .(((((.........(((.---------.....)))........(((..((((.(((.((((((((((....)))))))))).)))...)))))))))))). ( -38.90) >DroGri_CAF1 69842 90 - 1 AGGGUCGAAC------------GGCAGCCAGGAGAAUAACUAUAGCAAUGCACGCGAUCUGUCGCAGGAGGCGCUGUGGCGCCUGCAACUAGCCGCCGCCCA .(((.((..(------------(((.((.((........))...))..(((..((((....))))...((((((....)))))))))....)))).))))). ( -35.20) >DroMoj_CAF1 78065 102 - 1 AGGGUCGAACAACAUGCCCGGAGGCAGCCAGGAGAACAACUAUAGCAAUGCGCGCGAUUUGUCGCAGGAGGCGCUGUGGCGCCUCCAGCUGGCCGCCGCUCA .((((..........))))((.(((.(((((.............((.....))((((....)))).((((((((....))))))))..))))).))).)).. ( -45.10) >DroAna_CAF1 62796 93 - 1 AGGGUCGAGCAACAAUUCC---------AAUGAGAACAACUACAGCAACGCCAGGGACAUGUCGCAGGAGGCCUUGUGGCGCCUCCAAUUGGCCGCCGGCCA ..(((((.((.....(((.---------.....))).............((((.(((..(((((((((....)))))))))..)))...)))).))))))). ( -32.00) >DroPer_CAF1 74867 93 - 1 AGGGUCGAGCAACAAUUCG---------AAUGAGAACAACUACAGUAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGGCUCCAAUUGGUUGCGGCCCA .((((((........(((.---------.....)))((((((((....))....(((.((((((((((....)))))))))).)))...)))))))))))). ( -37.90) >consensus AGGGUCGAGCAACAAUUCG_________AAUGAGAACAACUACAGCAAUGCCAGGGAUCUGUCGCAGGAGGCCCUGUGGCGCCUCCAAUUGGCCGCCGCCCA .((((...........................((.....))...((...((((.(((..((((((((......))))))))..)))...)))).)).)))). (-19.38 = -19.77 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006