Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,910,750 – 3,910,842 |
Length | 92 |
Max. P | 0.617614 |
Location | 3,910,750 – 3,910,842 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 91.45 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -16.30 |
Energy contribution | -16.22 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.14 |
Mean z-score | -2.01 |
Structure conservation index | 0.72 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3910750 92 - 22407834 GCAAGAUGGGGUUUCCA-AAAUCUCGUGCCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU .....((((((((....-.)))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... ( -21.00) >DroSec_CAF1 44124 92 - 1 GCGAGAUGGGGUUUCCG-AAAUCUCGUACCCAAAACUAGAUUAUUUCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU (((((((.((....)).-..))))))).(((((....(((((......((....))(((((...))))).......)))))..)))))..... ( -24.40) >DroSim_CAF1 42613 92 - 1 GCGAGAUGGGGUUCCCA-AAAUCUCGUACCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU (((((((.((....)).-..))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... ( -28.30) >DroEre_CAF1 43061 92 - 1 UAGAGGUGGGAUUCCCA-AAAUCUGGUAUCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU ...........((((((-(..((((((.......))))))((((((..((....))(((((...))))).)))))).......)))))))... ( -23.00) >DroYak_CAF1 45242 93 - 1 GCUAGGUAGAAUUUCCAAAAAUCUCGUAUCUAAAACAAGAUUAUUGCCGCACAAGCUGCUCGUCGAGCAACAAUAAAAUCUCAUUGGGAAAAU ...........(((((((...(((.((.......)).)))((((((..((....))(((((...))))).)))))).......)))))))... ( -15.90) >consensus GCGAGAUGGGGUUUCCA_AAAUCUCGUACCCAAAACUAGAUUAUUGCCGCACAAGCUGCUCGACGAGCAACAAUAAAAUCUCAUUGGGAAAAU .....((((((((......)))))))).(((((....(((((((((..((....))(((((...))))).)))))..))))..)))))..... (-16.30 = -16.22 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:29 2006