| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 3,902,637 – 3,902,747 |
| Length | 110 |
| Max. P | 0.559682 |
| Location | 3,902,637 – 3,902,747 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -14.31 |
| Energy contribution | -12.85 |
| Covariance contribution | -1.46 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3902637 110 - 22407834 UAUCCGGCUA---UGAUGGUCAUAGC---CAUCACAUUGUUAGCCCUUCUGCAAUGGGGUAUUCGUGCCACAAUUAAGCCCAAAAUAUUGGGCCCACAGAAAAACGCAAUAAAAAA .....(((((---((.....))))))---)......(((((.((..(((((...(((((((....))))........((((((....))))))))))))))....))))))).... ( -33.00) >DroSec_CAF1 35908 110 - 1 AAUCCGGCUA---UGAUGGUCAUAGC---CAUCACAUUGUUAGCCCUUCUGCAAUGGGGUAUUCGUGCUACAAUUAAGCCCAAAAUAGCGGGCCCACAGAAAAACGCAAUAAAAAA .....(((((---((.....))))))---)......(((((.((..(((((...(((((((....))))........((((........))))))))))))....))))))).... ( -28.90) >DroSim_CAF1 34958 110 - 1 AAUCCGGCUA---UGAUGGUCAUAGC---CAUCACAUUGUUAGCCCUUCUGCAAUGGGGUAUUCGUGCUACAAUUAAGCCCAAAAUAGCGGGCCCACAGAAAAACGCAAUAAAAAA .....(((((---((.....))))))---)......(((((.((..(((((...(((((((....))))........((((........))))))))))))....))))))).... ( -28.90) >DroEre_CAF1 34719 110 - 1 UAUCCAACUC---UUAUGGUCAUGGC---UAUCACAUUGUUGGCCCUUCUGCAAUGGGCUAUUCGUGUUGCAAUUAAGCCCAAAAUAUCGGGCCCACAGAAAAACGCAAUAAAAAA ....((((..---..(((((....))---)))......))))((((.........)))).....(((((........((((........)))).........)))))......... ( -24.63) >DroYak_CAF1 36794 110 - 1 UAUCCAGCUC---UUAUGGUCAUUGC---UAUCACAUUGUUAGCCCUUCUGCAUUGGGGCAUUCGUGUUGCAAUUAAGCCCAAAAUAUCGGGCCCACAGAAAAACGCAAUAAAAAA ......((((---(..(((..(((((---...(((.......(((((........)))))....)))..)))))...((((........))))))).))).....))......... ( -23.90) >DroAna_CAF1 50460 116 - 1 UAUCCAGUGGUCUCCAUUUUCAUAACUGUUCUCAUAUUUCUGGCGAUAUUGCACUACAGCGAUCGUGUUGCAACUAUACUGCCAAUACCCAGUUUAAAAACAACUGCAAAAAAUAA ....((((................))))......(((((.((((.((((((((.(((.......))).))))).)))...)))).....(((((.......)))))....))))). ( -16.19) >consensus UAUCCAGCUA___UGAUGGUCAUAGC___CAUCACAUUGUUAGCCCUUCUGCAAUGGGGUAUUCGUGCUACAAUUAAGCCCAAAAUAUCGGGCCCACAGAAAAACGCAAUAAAAAA ....................................(((((.((..(((((...(((((((....))))........((((........))))))))))))....))))))).... (-14.31 = -12.85 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:28 2006