Locus 147

Sequence ID 2L_DroMel_CAF1
Location 435,130 – 435,220
Length 90
Max. P 0.930418
window231

overview

Window 1

Location 435,130 – 435,220
Length 90
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 69.79
Mean single sequence MFE -26.18
Consensus MFE -14.19
Energy contribution -14.13
Covariance contribution -0.05
Combinations/Pair 1.29
Mean z-score -1.79
Structure conservation index 0.54
SVM decision value 1.21
SVM RNA-class probability 0.930418
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 435130 90 - 22407834
CAAACGGUCGUAAGUUCGAGCAGCGAGGAAUGCGAAU------CAAAUUGGCU-------------------CUAAAGAGGUCUCA----GAGAUCACCAAGCUGGAU-AGCUAACUCGG
.....(.(((......))).)..((((....((...(------((..((((.(-------------------(....))((((...----..)))).))))..)))..-.))...)))). ( -20.20)
>DroSec_CAF1 12478 90 - 1
CAAGCGGUCGUAAGAUCGCGCAGCGAGGAAUGCGAAU------CAAAUUGGCU-------------------CUAUAGAGAUCUCA----GAGAUCACCAAGCUGGAU-CGCUAACUCGG
...((((((....))))))....((((....((((.(------((..((((.(-------------------(....))((((...----..)))).))))..))).)-)))...)))). ( -33.20)
>DroSim_CAF1 11579 90 - 1
CAAGCGGUCGUAAGAUCGCGCAGCGAGGAAUGCGAAU------CAAAUUGGCU-------------------CAAGAGAGGUCUUA----GAGAUCACCAAGCUGGAU-CGCUAACUCGG
...((((((....))))))....((((....((((.(------((..((((((-------------------(((((....)))).----)))....))))..))).)-)))...)))). ( -33.30)
>DroEre_CAF1 12548 90 - 1
UAAACGCUCGUAAGAUCGAGCAGCGAGGAAUGCGAAU------CCAAUUGGCU-------------------GUAGAGAGGUCUCA----GAGAUCGGAU-AAUAGAUCACAUGGAUCAG
.....(((((......))))).(((.....)))((.(------(((.....((-------------------(.(((....)))))----).((((....-....))))...)))))).. ( -22.40)
>DroYak_CAF1 12121 90 - 1
UAAACGGUCGUAAGAUCGAGCAGCGAGGAAUGCGAAU------CGAAUUGGCU-------------------CUAGAGAGGUCUCG----GAGAUCAUAU-GAUAGAUUCGAUAGAUCAG
....(((((....))))).(((........)))..((------((((((..((-------------------((.(((....))))----)))(((....-))).))))))))....... ( -25.60)
>DroAna_CAF1 15781 119 - 1
UAAACGAUCAUAAAAUCGAGCAGCGUGGAAUGCGAAUACGAAUCGAAUCGAAUUUAAUUGAAUCAAUAGACUUUAUGGGAAUCUCAAUCUAAGAUUCUUAAAGAUGAU-CACUAAUAGUG
.....((((((....(((((((........)))((((.(((......))).))))..)))).........(((((..(((((((.......)))))))))))))))))-).......... ( -22.40)
>consensus
CAAACGGUCGUAAGAUCGAGCAGCGAGGAAUGCGAAU______CAAAUUGGCU___________________CUAGAGAGGUCUCA____GAGAUCACCAAGCUGGAU_CGCUAACUCGG
....(((((....))))).(((........)))..............................................((((((.....))))))........................ (-14.19 = -14.13 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:26 2006