Locus 1468

Sequence ID 2L_DroMel_CAF1
Location 3,887,159 – 3,887,270
Length 111
Max. P 0.730876
window2389

overview

Window 9

Location 3,887,159 – 3,887,270
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 73.36
Mean single sequence MFE -42.25
Consensus MFE -16.33
Energy contribution -16.08
Covariance contribution -0.25
Combinations/Pair 1.24
Mean z-score -2.05
Structure conservation index 0.39
SVM decision value 0.42
SVM RNA-class probability 0.730876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 3887159 111 + 22407834
AAAGGUGAGCCCGCUCCACUGCCCAAAACCUGGGCCAACUUCUUGCCUAGCUGCAAGGCCAUGAGUUCCUCGUCCGGCGAACUUUCCGCCGGGCUAUUGGGUGCUACCAAA
...((((.((((((((....(((((.....))))).....((((((......))))))....)))).....((((((((.......))))))))....))))..))))... ( -44.90)
>DroVir_CAF1 44292 93 + 1
GGCGGUGUGCCCG---UGGUGCCCAGCACCUGGGCCAGCUUCUUGCCCAGCUGCAGCGCCAUGCGCU---CAUCCGGCGAACUCUCCGGC------------GUUAUCAGC
.((((((.((.((---((((((...(((.((((((.((...)).)))))).))).)))))))).)).---))))(((.(....).)))))------------......... ( -42.00)
>DroPse_CAF1 35726 92 + 1
-GCGGUGUGCCGGU---GCUGCCCAGCACCUGGGCCAGCUUCUUGCCCAGCUGCAGGGCCAUUAGUU---CGUCGGGGGAACCCUCUGAC------------ACUACCAGC
-..((((.((..((---(..((((.(((.((((((.((...)).)))))).))).)))))))..)).---.((((((((...))))))))------------..))))... ( -42.10)
>DroEre_CAF1 18746 111 + 1
AAGGGUGAUCCCGCGCCACUGCCCAAAACUUGGGCCAACUUCUUGCCCAGCUGCAAGGCCAUGAGCUCCUCGUCCGGCGAACUUUCCGCCGGGCUAUUGGGCGCUACCAAA
..(((....)))(((((...(((((.....)))))(((..((((((......))))))....(((...)))((((((((.......))))))))..))))))))....... ( -45.00)
>DroAna_CAF1 33576 108 + 1
AAGGGUGAGCCAGUUCCACUGCCCAGGACUUGGGCCAGCUUCUUGCCCAACUGCAAAGCCAUUAGUU---CGUCCGGCGAACUCUCCGCCGGGCUAUUCGGUGCUACCAAU
...((((.(((((.....))((((.((((((((((.((...)).))))))((....)).........---.))))((((.......)))))))).....)))..))))... ( -37.40)
>DroPer_CAF1 36016 92 + 1
-GCGGUGUGCCGGU---GCUGCCCAGCACCUGGGCCAGCUUCUUGCCCAGCUGCAGGGCCAUUAGUU---CGUCGGGGGAACCCUCUGAC------------ACUACCAGC
-..((((.((..((---(..((((.(((.((((((.((...)).)))))).))).)))))))..)).---.((((((((...))))))))------------..))))... ( -42.10)
>consensus
AACGGUGAGCCCGU__CACUGCCCAGCACCUGGGCCAGCUUCUUGCCCAGCUGCAAGGCCAUGAGUU___CGUCCGGCGAACUCUCCGCC____________GCUACCAAC
...(((...((.........((((((...)))))).....((((((......)))))).................))...)))............................ (-16.33 = -16.08 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:25 2006