Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 3,886,549 – 3,886,661 |
Length | 112 |
Max. P | 0.507194 |
Location | 3,886,549 – 3,886,661 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -15.19 |
Energy contribution | -15.63 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.64 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507194 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 3886549 112 - 22407834 UUGAUAGAAUAUGCAAAGUGUUUAAAACCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUGAAAUCUGAUA-AAACAAUAGUGCAUCGAGUUGGCAUAAAGCACUUAUGC ............(((((((((((....(((.........((((....(((((.((((((((((.(....).)))-))))))).).)))))))).)))....)))))))).))) ( -23.80) >DroSec_CAF1 18628 112 - 1 UUCAUAAAAUAUGCAAAGUGUUUAAAUCCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA-AAACAAUAGUGCAAGGAAUUGGCAUAAAGCACUUACGC ...............((((((((..((((.............)))).(((((.((((((((((........)))-)))))))(((.......)))))))).)))))))).... ( -21.12) >DroSim_CAF1 18747 112 - 1 UUGAUAGAAUAUGCAAAGUGUUUAAAGCCAUUUAAAGAUUGCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA-AAACAAUAGUGCAACGAGUUGGCAUAAAGCACUUACGC ...............((((((((...((((.((...(.((((((.......))((((((((((........)))-)))))))...))))).)).))))...)))))))).... ( -25.30) >DroEre_CAF1 18089 109 - 1 UUGAUAAAAUAUACAAAGUGUUUAACGCAAUUGCAAGAUUUUGGAUAAUUUGCAUUGUUUUGUAAAAUCUGAUUGCAACAUUCAUGC----AGUUGGCAUAAAGCACUUACAC ...............((((((((.......(((((((((..((.(.....).))..)))))))))...(..((((((.......)))----)))..)....)))))))).... ( -24.80) >consensus UUGAUAAAAUAUGCAAAGUGUUUAAAGCCAUUUAAAGAUUUCGGAUAAUGCCCAUUGUUUUGUAAAAUCUGAUA_AAACAAUAGUGCAACGAGUUGGCAUAAAGCACUUACGC ...............((((((((............((((((((((((((....)))))))...))))))).............((((.........)))).)))))))).... (-15.19 = -15.63 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006